[2023-04-05 01:57:54,455] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-04-05 01:57:54,455] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-04-05 01:57:54,455] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-04-05 01:57:54,458] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-04-05 01:57:54,458] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-04-05 01:57:54,458] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H3VCHDRX3/merged [2023-04-05 01:57:54,727] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-04-05 01:57:54,727] multiqc [INFO ] This is MultiQC v1.9 [2023-04-05 01:57:54,727] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/H3VCHDRX3/merged [2023-04-05 01:57:54,727] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/H3VCHDRX3/merged [2023-04-05 01:57:54,727] multiqc [INFO ] Template : default [2023-04-05 01:57:54,727] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-04-05 01:57:54,727] multiqc [INFO ] Searching : /scratch/gencore/logs/html/H3VCHDRX3/merged [2023-04-05 01:57:54,728] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-04-05 01:57:54,728] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-31604338/tmp0llq_90j [2023-04-05 01:57:54,864] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E11ATH_fastqc.html [2023-04-05 01:57:54,867] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded 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[2023-04-05 01:58:13,533] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_D10ATH_fastqc.html [2023-04-05 01:58:13,579] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A09CHI_fastqc.html [2023-04-05 01:58:13,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A09CHI_fastqc.html [2023-04-05 01:58:13,649] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C09ATH_fastqc.html [2023-04-05 01:58:13,651] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C09ATH_fastqc.html [2023-04-05 01:58:13,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_D03ATH_fastqc.html [2023-04-05 01:58:13,735] multiqc [DEBUG 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because it exceeded search pattern filesize limit: H3VCHDRX3_n02_G07CHI_fastqc.html [2023-04-05 01:58:13,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C11ATH_fastqc.html [2023-04-05 01:58:13,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C11ATH_fastqc.html [2023-04-05 01:58:14,045] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_D01CHI_fastqc.html [2023-04-05 01:58:14,047] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_D01CHI_fastqc.html [2023-04-05 01:58:14,091] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B06CHI_fastqc.html [2023-04-05 01:58:14,093] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B06CHI_fastqc.html [2023-04-05 01:58:14,174] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A08ATH_fastqc.html [2023-04-05 01:58:14,177] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A08ATH_fastqc.html [2023-04-05 01:58:14,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_G10ATH_fastqc.html [2023-04-05 01:58:14,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_G10ATH_fastqc.html [2023-04-05 01:58:14,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A07ATH_fastqc.html [2023-04-05 01:58:14,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A07ATH_fastqc.html [2023-04-05 01:58:14,347] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H01ATH_fastqc.html [2023-04-05 01:58:14,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H01ATH_fastqc.html [2023-04-05 01:58:14,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_H06CHI_fastqc.html [2023-04-05 01:58:14,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_H06CHI_fastqc.html [2023-04-05 01:58:14,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H03ATH_fastqc.html [2023-04-05 01:58:14,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H03ATH_fastqc.html [2023-04-05 01:58:14,498] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_G03ATH_fastqc.html [2023-04-05 01:58:14,501] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_G03ATH_fastqc.html [2023-04-05 01:58:14,600] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_D06ATH_fastqc.html [2023-04-05 01:58:14,602] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_D06ATH_fastqc.html [2023-04-05 01:58:14,681] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C05CHI_fastqc.html [2023-04-05 01:58:14,683] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C05CHI_fastqc.html [2023-04-05 01:58:14,728] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_D07ATH_fastqc.html [2023-04-05 01:58:14,730] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_D07ATH_fastqc.html [2023-04-05 01:58:14,823] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_H03ATH_fastqc.html [2023-04-05 01:58:14,825] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_H03ATH_fastqc.html [2023-04-05 01:58:14,869] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E05ATH_fastqc.html [2023-04-05 01:58:14,872] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E05ATH_fastqc.html [2023-04-05 01:58:14,933] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A11CHI_fastqc.html [2023-04-05 01:58:14,936] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A11CHI_fastqc.html [2023-04-05 01:58:14,979] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H06ATH_fastqc.html [2023-04-05 01:58:14,981] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_H06ATH_fastqc.html [2023-04-05 01:58:15,026] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A08CHI_fastqc.html [2023-04-05 01:58:15,028] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A08CHI_fastqc.html [2023-04-05 01:58:15,086] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B08ATH_fastqc.html [2023-04-05 01:58:15,089] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B08ATH_fastqc.html [2023-04-05 01:58:15,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_B08CHI_fastqc.html [2023-04-05 01:58:15,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_B08CHI_fastqc.html [2023-04-05 01:58:15,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A11CHI_fastqc.html [2023-04-05 01:58:15,202] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A11CHI_fastqc.html [2023-04-05 01:58:15,261] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A07CHI_fastqc.html [2023-04-05 01:58:15,264] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A07CHI_fastqc.html [2023-04-05 01:58:15,318] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A01CHI_fastqc.html [2023-04-05 01:58:15,321] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_A01CHI_fastqc.html [2023-04-05 01:58:15,364] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C06CHI_fastqc.html [2023-04-05 01:58:15,367] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C06CHI_fastqc.html [2023-04-05 01:58:15,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E03CHI_fastqc.html [2023-04-05 01:58:15,430] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E03CHI_fastqc.html [2023-04-05 01:58:15,488] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A03CHI_fastqc.html [2023-04-05 01:58:15,490] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_A03CHI_fastqc.html [2023-04-05 01:58:15,550] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C03ATH_fastqc.html [2023-04-05 01:58:15,552] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C03ATH_fastqc.html [2023-04-05 01:58:15,620] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E01ATH_fastqc.html [2023-04-05 01:58:15,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E01ATH_fastqc.html [2023-04-05 01:58:15,685] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E05CHI_fastqc.html [2023-04-05 01:58:15,688] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_E05CHI_fastqc.html [2023-04-05 01:58:15,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_F01CHI_fastqc.html [2023-04-05 01:58:15,735] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_F01CHI_fastqc.html [2023-04-05 01:58:15,794] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_B04CHI_fastqc.html [2023-04-05 01:58:15,796] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_B04CHI_fastqc.html [2023-04-05 01:58:15,858] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C08ATH_fastqc.html [2023-04-05 01:58:15,860] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C08ATH_fastqc.html [2023-04-05 01:58:15,913] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C07CHI_fastqc.html [2023-04-05 01:58:15,916] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C07CHI_fastqc.html [2023-04-05 01:58:15,961] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C06ATH_fastqc.html [2023-04-05 01:58:15,963] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_C06ATH_fastqc.html [2023-04-05 01:58:16,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C02CHI_fastqc.html [2023-04-05 01:58:16,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C02CHI_fastqc.html [2023-04-05 01:58:16,079] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_D05ATH_fastqc.html [2023-04-05 01:58:16,081] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_D05ATH_fastqc.html [2023-04-05 01:58:16,125] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B08CHI_fastqc.html [2023-04-05 01:58:16,128] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_B08CHI_fastqc.html [2023-04-05 01:58:16,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n02_G07ATH_fastqc.html [2023-04-05 01:58:16,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n02_G07ATH_fastqc.html [2023-04-05 01:58:16,244] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C03CHI_fastqc.html [2023-04-05 01:58:16,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: H3VCHDRX3_n01_C03CHI_fastqc.html [2023-04-05 01:58:17,040] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-04-05 01:58:17,042] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-04-05 01:58:17,126] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 174 samples (table) [2023-04-05 01:58:17,136] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-04-05 01:58:17,137] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-04-05 01:58:17,141] multiqc [DEBUG ] No samples found: conpair [2023-04-05 01:58:17,146] multiqc [DEBUG ] No samples found: peddy [2023-04-05 01:58:17,150] multiqc [DEBUG ] No samples found: somalier [2023-04-05 01:58:17,154] multiqc [DEBUG ] No samples found: methylQA [2023-04-05 01:58:17,160] multiqc [DEBUG ] No samples found: mosdepth [2023-04-05 01:58:17,164] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-04-05 01:58:17,167] multiqc [DEBUG ] No samples found: qualimap [2023-04-05 01:58:17,171] multiqc [DEBUG ] No samples found: preseq [2023-04-05 01:58:17,176] multiqc [DEBUG ] No samples found: quast [2023-04-05 01:58:17,180] multiqc [DEBUG ] No samples found: qorts [2023-04-05 01:58:17,184] multiqc [DEBUG ] No samples found: rna_seqc [2023-04-05 01:58:17,188] multiqc [DEBUG ] No samples found: rockhopper [2023-04-05 01:58:17,192] multiqc [DEBUG ] No samples found: rsem [2023-04-05 01:58:17,201] multiqc [DEBUG ] No samples found: rseqc [2023-04-05 01:58:17,205] multiqc [DEBUG ] No samples found: busco [2023-04-05 01:58:17,209] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-04-05 01:58:17,213] multiqc [DEBUG ] No samples found: disambiguate [2023-04-05 01:58:17,217] multiqc [DEBUG ] No samples found: supernova [2023-04-05 01:58:17,227] multiqc [DEBUG ] No samples found: deeptools [2023-04-05 01:58:17,231] multiqc [DEBUG ] No samples found: sargasso [2023-04-05 01:58:17,235] multiqc [DEBUG ] No samples found: verifybamid [2023-04-05 01:58:17,239] multiqc [DEBUG ] No samples found: mirtrace [2023-04-05 01:58:17,243] multiqc [DEBUG ] No samples found: happy [2023-04-05 01:58:17,247] multiqc [DEBUG ] No samples found: mirtop [2023-04-05 01:58:17,252] multiqc [DEBUG ] No samples found: homer [2023-04-05 01:58:17,256] multiqc [DEBUG ] No samples found: macs2 [2023-04-05 01:58:17,260] multiqc [DEBUG ] No samples found: theta2 [2023-04-05 01:58:17,264] multiqc [DEBUG ] No samples found: snpeff [2023-04-05 01:58:17,269] multiqc [DEBUG ] No samples found: gatk [2023-04-05 01:58:17,273] multiqc [DEBUG ] No samples found: htseq [2023-04-05 01:58:17,278] multiqc [DEBUG ] No samples found: bcftools [2023-04-05 01:58:17,282] multiqc [DEBUG ] No samples found: featureCounts [2023-04-05 01:58:17,287] multiqc [DEBUG ] No samples found: fgbio [2023-04-05 01:58:17,297] multiqc [DEBUG ] No samples found: dragen [2023-04-05 01:58:17,301] multiqc [DEBUG ] No samples found: dedup [2023-04-05 01:58:17,305] multiqc [DEBUG ] No samples found: damageprofiler [2023-04-05 01:58:17,323] multiqc [DEBUG ] No samples found: biobambam2 [2023-04-05 01:58:17,327] multiqc [DEBUG ] No samples found: mtnucratio [2023-04-05 01:58:17,329] multiqc [DEBUG ] No samples found: picard [2023-04-05 01:58:17,333] multiqc [DEBUG ] No samples found: prokka [2023-04-05 01:58:17,336] multiqc [DEBUG ] No samples found: samblaster [2023-04-05 01:58:17,343] multiqc [DEBUG ] No samples found: samtools [2023-04-05 01:58:17,347] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-04-05 01:58:17,352] multiqc [DEBUG ] No samples found: bamtools [2023-04-05 01:58:17,356] multiqc [DEBUG ] No samples found: jellyfish [2023-04-05 01:58:17,362] multiqc [DEBUG ] No samples found: vcftools [2023-04-05 01:58:17,366] multiqc [DEBUG ] No samples found: longranger [2023-04-05 01:58:17,370] multiqc [DEBUG ] No samples found: stacks [2023-04-05 01:58:17,374] multiqc [DEBUG ] No samples found: varscan2 [2023-04-05 01:58:17,385] multiqc [DEBUG ] No samples found: bbmap [2023-04-05 01:58:17,389] multiqc [DEBUG ] No samples found: bismark [2023-04-05 01:58:17,393] multiqc [DEBUG ] No samples found: biscuit [2023-04-05 01:58:17,397] multiqc [DEBUG ] No samples found: hicexplorer [2023-04-05 01:58:17,401] multiqc [DEBUG ] No samples found: hicup [2023-04-05 01:58:17,405] multiqc [DEBUG ] No samples found: hicpro [2023-04-05 01:58:17,408] multiqc [DEBUG ] No samples found: salmon [2023-04-05 01:58:17,412] multiqc [DEBUG ] No samples found: kallisto [2023-04-05 01:58:17,416] multiqc [DEBUG ] No samples found: slamdunk [2023-04-05 01:58:17,420] multiqc [DEBUG ] No samples found: star [2023-04-05 01:58:17,424] multiqc [DEBUG ] No samples found: hisat2 [2023-04-05 01:58:17,428] multiqc [DEBUG ] No samples found: tophat [2023-04-05 01:58:17,432] multiqc [DEBUG ] No samples found: bowtie2 [2023-04-05 01:58:17,436] multiqc [DEBUG ] No samples found: bowtie1 [2023-04-05 01:58:17,440] multiqc [DEBUG ] No samples found: snpsplit [2023-04-05 01:58:17,444] multiqc [DEBUG ] No samples found: kat [2023-04-05 01:58:17,448] multiqc [DEBUG ] No samples found: leehom [2023-04-05 01:58:17,452] multiqc [DEBUG ] No samples found: adapterRemoval [2023-04-05 01:58:17,455] multiqc [DEBUG ] No samples found: clipandmerge [2023-04-05 01:58:17,459] multiqc [DEBUG ] No samples found: cutadapt [2023-04-05 01:58:17,463] multiqc [DEBUG ] No samples found: flexbar [2023-04-05 01:58:17,467] multiqc [DEBUG ] No samples found: kaiju [2023-04-05 01:58:17,471] multiqc [DEBUG ] No samples found: kraken [2023-04-05 01:58:17,475] multiqc [DEBUG ] No samples found: malt [2023-04-05 01:58:17,479] multiqc [DEBUG ] No samples found: trimmomatic [2023-04-05 01:58:17,483] multiqc [DEBUG ] No samples found: sickle [2023-04-05 01:58:17,487] multiqc [DEBUG ] No samples found: skewer [2023-04-05 01:58:17,491] multiqc [DEBUG ] No samples found: sortmerna [2023-04-05 01:58:17,494] multiqc [DEBUG ] No samples found: biobloomtools [2023-04-05 01:58:17,498] multiqc [DEBUG ] No samples found: fastq_screen [2023-04-05 01:58:17,502] multiqc [DEBUG ] No samples found: afterqc [2023-04-05 01:58:17,506] multiqc [DEBUG ] No samples found: fastp [2023-04-05 01:58:32,342] multiqc.modules.fastqc.fastqc [INFO ] Found 348 reports [2023-04-05 01:58:54,468] multiqc [DEBUG ] No samples found: pycoqc [2023-04-05 01:58:54,472] multiqc [DEBUG ] No samples found: minionqc [2023-04-05 01:58:54,476] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-04-05 01:58:54,480] multiqc [DEBUG ] No samples found: clusterflow [2023-04-05 01:58:54,485] multiqc [DEBUG ] No samples found: bcl2fastq [2023-04-05 01:58:54,489] multiqc [DEBUG ] No samples found: interop [2023-04-05 01:58:54,493] multiqc [DEBUG ] No samples found: ivar [2023-04-05 01:58:54,497] multiqc [DEBUG ] No samples found: flash [2023-04-05 01:58:54,501] multiqc [DEBUG ] No samples found: seqyclean [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-04-05 01:58:54,502] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-04-05 01:58:54,503] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-04-05 01:58:54,503] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-04-05 01:58:54,923] multiqc [INFO ] Compressing plot data [2023-04-05 01:58:55,038] multiqc [INFO ] Report : multiqc_report.html [2023-04-05 01:58:55,038] multiqc [INFO ] Data : multiqc_data [2023-04-05 01:58:55,038] multiqc [DEBUG ] Moving data file from '/state/partition1/job-31604338/tmp0llq_90j/multiqc_data' to '/scratch/gencore/logs/html/H3VCHDRX3/merged/multiqc_data' [2023-04-05 01:58:55,175] multiqc [INFO ] MultiQC complete