FastQCFastQC Report
Wed 5 Apr 2023
H3VCHDRX3_n02_A04ATH.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3VCHDRX3_n02_A04ATH.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3933
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAGAAAGAATTCAGTTCAGATGTAGGATACCTATCCAGAAGTTTTCGC50.12712941774726672No Hit
GCACTCACTTTGTTTTCTTCTAACTACTTTTGCTGTAAAGCTTTGCCCTT40.10170353419781336No Hit
GTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACT40.10170353419781336No Hit
GAATATCCTTATCTGGAACAGGACATTCAATCACACCCTGAAAACATAGA40.10170353419781336No Hit
GAGTCAGATGGTTTGGCAATTCCTCAGGGGCAGATGAATCAAGAAGATTT40.10170353419781336No Hit
GAACGGGGACAGGGATTTCTTCTTGTTTTCTTTATTATTGATAGGAATTC40.10170353419781336No Hit
GTCCTTTACCTCATTGATTATCTTTTGTCCCATGTCTTCTCTTTAACCAA40.10170353419781336No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)