FastQCFastQC Report
Wed 5 Apr 2023
H3VCHDRX3_n01_A04ATH.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3VCHDRX3_n01_A04ATH.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3933
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGTTACAGACAGAGTTCGAAAAGATCAAATCTTTGATGATTCCATCATA50.12712941774726672No Hit
ACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTCT40.10170353419781336No Hit
GTGATACCCTCAGCATGTGTGGGAATTGATTTAGAATTGTTACACAAAAT40.10170353419781336No Hit
CTTCGGGCATGGCCAGCTCCCATAGTGTGACGGGCGGTGTGTACAAGGCC40.10170353419781336No Hit
ATCCTAGATGTAAACATAAACGCTGTAACATTGCCAAGTGCAAATCATCT40.10170353419781336No Hit
CCCCGAGATATTATTACAGTGAAGGATGAACAAAACTCTAGAACTTTGGT40.10170353419781336No Hit
GTACAGAGAATGGGGTCTGTCATCTTTATCAAGATGGTTTTACTTCGTCG40.10170353419781336No Hit
CTCATCACCATCCCTTGTGGGAACCACTAAAGTCAAAGGCTTATCAGATG40.10170353419781336No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)