FastQCFastQC Report
Thu 12 Mar 2020
H3V73AFX2_n01_CD4_CFSE_low.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3V73AFX2_n01_CD4_CFSE_low.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences113
Sequences flagged as poor quality0
Sequence length150
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGATCGTTACCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCAC108.849557522123893No Hit
ATACTGTATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTAT87.079646017699115No Hit
GATAGGTCGCATCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA76.1946902654867255No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA76.1946902654867255No Hit
CGATCATGATCGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACT76.1946902654867255No Hit
ATACACGATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTAT65.3097345132743365No Hit
ACGATCGATAGGTAAGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGT54.424778761061947No Hit
TAAGTAGAGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG43.5398230088495577No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43.5398230088495577No Hit
GATCGATAACGCATTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCC43.5398230088495577No Hit
GATCGCGCGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTA32.6548672566371683No Hit
ATACACTATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTAT32.6548672566371683No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG21.7699115044247788No Hit
CGATCGATACAGGTATTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTC21.7699115044247788No Hit
TTGCACGATATATACATGGATGCTATTTAGTACGCGACTACCTAAATTAT10.8849557522123894No Hit
GGGGTGGTTTGGTAAGGTGTTGTGGATTGGTGGATTGACGGGCTGTTGGT10.8849557522123894No Hit
GGGTTGGTTTGGTATGGTGTTGTGGATTGGTGGATTGTGGGGGTGTTGGT10.8849557522123894No Hit
GGTGGGGGGGGTGTTGTGGTTTGGTGGTTAGTGGGGGTGTTGGTGGTGTA10.8849557522123894No Hit
TTTGTGTTTGTGTTGTGGATAGGTGGATAGAGGGGGAGTTGGTGGTGTTT10.8849557522123894No Hit
GGGTTGGATAGGTAAGGTCTTGTGGAAAGGACGAAACACCGCCTGTAGGT10.8849557522123894No Hit
GGGTTGGTTTGGTTTGGTGTTGTGGTTTGGTGGTTTGTGGGGGTGTTGGT10.8849557522123894No Hit
TCGTTGGTTTGGGTGTTGTGGTTTGTTGGTTTGTTGGGGTGTTGGTGGTG10.8849557522123894No Hit
ATACTGTATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGGTCCACTA10.8849557522123894No Hit
GTTTGGTGGGTTGTTGTGGTTTGGTGGTATGTGTGGGTGTTGGTGGTGTT10.8849557522123894No Hit
TTCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCT10.8849557522123894No Hit
GGGTGTTGTTGGTGTTGTGGTTTGGTGGTTTGGGGGGGTGTTGGTGGTGT10.8849557522123894No Hit
ATACTGTATCTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCACTATG10.8849557522123894No Hit
CGCTGATAAAGGAAAGGATACTAGTGATTATCTTGCTGCTGCATTTCCTG10.8849557522123894No Hit
GGTGGGGGGGTTGTTGTGGTTAGGTCGAAAGTGCGGGAGTTGGTGGAGTA10.8849557522123894No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGT10.8849557522123894No Hit
GGTGGGGGGGTTGTTGTGGTTGGGTAGAAAGTGGGGGTGTTGGTGGTCTA10.8849557522123894No Hit
GGGTGGTTTGTGGTTTTGTTGTGGTTTGGTGGTTTGTGGGGGTGTTGGTG10.8849557522123894No Hit
CGCTCATGATCGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACT10.8849557522123894No Hit
TTTGTGTTTCTGTTGTGGAAAGGACGAAACACCGCGAGTAGCTACACTAT10.8849557522123894No Hit
CTTCTCATATTGGAGCTACTGCAAAGGATAAAACAAATGTCGTCACAGAT10.8849557522123894No Hit
GGTGGGGGGGTTGGTGTGGTGTGGTGGTGTGGGGGGGTGTTGGTGGTCTT10.8849557522123894No Hit
GGTGGGTTGTTGTGGTTTGGTCGTTACTCGGGGTGTTGGTGGTGTATGTG10.8849557522123894No Hit
GGGTGATGTTGGTCTTGTGGTTTGGACGTTACTCAGCCAGTAGGTGCTGT10.8849557522123894No Hit
CGATCATGATCGTCTAGTGGAAAGGACGAAACACCGGCTGTAGGTCCTCT10.8849557522123894No Hit
TTACAATCGAGATGTGGTAACGGCCAAACACCCGCACTTCGTGCACATAG10.8849557522123894No Hit
CATTTTGTGCATATACCTGGTCTTTCGTATTCTGGCGTGAAGTCGCCGAC10.8849557522123894No Hit
CAAAATGAGATGCTTGCTTATCAACAGAAGGAGTCTACTGCTCGCGTTGC10.8849557522123894No Hit
GGGGGGGGGTGGTTTCGTGTTGTGGTTAGTAGGAAACTCCGGGAGTTGGT10.8849557522123894No Hit
GTTGTGTTTGTGTTGTGGTTTGGTGGTTTGTGGGGGTGTTGGTGGTGTTT10.8849557522123894No Hit
GTTTGGTGGGTTGTTGTGGATTGGTCGTATGTGGGGGTGTTGGTCGAGTA10.8849557522123894No Hit
GGTGGGGGGGTTCTTGTGGTAAGGAGGAATGTGGGGGTGTAGGTGGTCTA10.8849557522123894No Hit
GATCGCGCGGTTCTTGAGGAAAGGACGAAACACCGCCAGTAGGTCCACTA10.8849557522123894No Hit
TCGATCGTTACCATAGGTGTTCACGTAAGGACGAAAGACCGGCTGTACCA10.8849557522123894No Hit
GGTTGTTGATGGTCTTGTGGTTTGGAGGTTAGTCGGGCAGTAGGTGGTGT10.8849557522123894No Hit
ATTGTGATTCTCTTGACGATAGGACGAAACAGCGCGAGTAGGTCGAGTTT10.8849557522123894No Hit
AACCAAACATACAAAAAACTCCAAAAGTAGTAACACACCAACAAGGAAAA10.8849557522123894No Hit
GGTGGGGGGGTTGTTGTGGTTTGGAGGTTTGTGGGGGAGTTGGTGCGGTT10.8849557522123894No Hit
GTGGGTTGGTTGGTTCTTGTGGTTTGGACGATAGTGGGGTGTTGGTGGTC10.8849557522123894No Hit
TAACAAAGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG10.8849557522123894No Hit
GGGTTGGTTTGGTTTGGTGTTGTGGTAAGGTGGATTGTCGGGCTGTTGGT10.8849557522123894No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers