FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9724i1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9724i1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7225446
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5250.010.71005444
GCGTCGT7600.08.58457212
CTCGGTG6308.440111E-107.855018638
GTGTAGG6908.185452E-117.82510917
AGCGTCG8350.07.813665411
GTCGCCG7302.8376235E-107.394083545
CGTGTAG7201.2385499E-86.87414116
AGATCGG9851.4551915E-116.6394911
TGGTCGC9056.6211214E-106.461580843
GTGGTCG7401.5113619E-76.382834442
GTCGTGT8609.789801E-96.27828514
GAGCGTC12051.8189894E-126.161482310
GTAGGGA9206.4010237E-96.113281719
AGAGCGT12253.6379788E-126.06130659
ATCTCGG9103.261266E-85.932543836
CGTCGTG13103.6379788E-125.839126613
GGTGGTC9651.12144335E-75.59403241
GATCGGA11302.9849616E-95.5836882
AAGAGCG12602.401066E-105.53640278
TGTAGGG8958.8053457E-75.52999718
Produced by FastQC (version 0.11.2)