FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9724i-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9724i-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5852894
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC7400.032.82518444
GTCGCCG8750.027.24547445
GCGTCGT10600.025.89266612
AGCGTCG10450.025.61914311
GTGGTCG9900.025.21776842
CTCGGTG7850.024.64186538
CGTGTAG10150.024.381316
GTGTAGG10500.023.14006817
TGGTCGC10900.022.904643
GTCGTGT11700.022.88185914
ATCTCGG9050.022.12024736
AGATCGG12300.021.638821
TGTAGGG11550.021.03624718
GTAGGGA11650.020.2761819
GGTGGTC12000.020.24271441
GATCTCG10200.019.18591335
CGTCGTG14450.019.1502713
TCGTGTA14200.018.85336315
TCGGAAG14350.018.8378664
GATCGGA13950.018.7410722
Produced by FastQC (version 0.11.2)