FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9724a1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9724a1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6723280
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5500.017.5837544
GTCGCCG6950.013.9149945
CGTGTAG7050.013.721816
AGCGTCG7900.013.3849111
GTCGTGT8750.012.855926514
GTGTAGG8750.011.82727617
GCGTCGT9200.011.73784412
TGTAGGG8750.011.31304718
GTGGTCG8750.011.05305442
CTCGGTG7750.011.02899838
GAGCGTC10600.010.82485110
GTAGGGA9600.010.77998919
ATCTCGG7750.010.73932136
TGGTCGC8500.010.58424143
TCGTGTA10600.010.18748915
GATCGGA10800.09.8060662
CGTCGTG11200.09.441071513
GATCTCG9300.08.94950135
AGAGCGT12100.08.9255729
AGATCGG12250.08.6524411
Produced by FastQC (version 0.11.2)