FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9724a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9724a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7803444
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC5650.015.52293744
GTCGCCG6650.011.83582545
CGTGTAG9050.011.435163516
AGCGTCG9750.011.07637411
GTGGTCG8600.010.98317842
CTCGGTG8000.010.68320338
GCGTCGT9750.010.61465512
GTAGGGA10250.010.5355919
TGGTCGC8900.010.10738643
TGTAGGG11300.09.95481218
GATCGGA11400.09.8843492
GTCGTGT10650.09.506083514
GAGCGTC11400.09.47345710
GTGTAGG10600.09.3387417
CGTCGTG11250.09.19924813
ATCTCGG8250.08.99753436
AGATCGG13300.08.6488561
GATCTCG9900.08.17968235
AGAGCGT13250.08.1512189
TCGTGTA12800.07.90925715
Produced by FastQC (version 0.11.2)