FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9722b-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9722b-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7754210
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC9450.027.60633744
GCGTCGT13300.023.51255612
AGCGTCG13650.022.91085211
CGTGTAG12200.022.68188516
GTGGTCG12100.021.74674442
GTCGCCG11000.021.67155845
GATCGGA14900.021.173962
TGGTCGC12400.020.67623143
GTCGTGT14600.020.64903814
GTGTAGG13950.020.15929217
AGATCGG15600.019.8068661
TGTAGGG14700.019.58951618
CTCGGTG11300.019.30713738
GTAGGGA15350.018.32006819
CGTCGTG16950.018.18474213
GAGCGTC17100.018.02604310
ATCTCGG13250.017.31579836
TCGTGTA18600.016.20796815
GAGTGTA17450.015.98406628
AGAGCGT19550.015.7679399
Produced by FastQC (version 0.11.2)