FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah9722a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah9722a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7827782
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC12850.031.32645244
GTCGCCG14000.027.9495145
AGCGTCG17000.026.73278411
CTCGGTG13300.026.21230538
GCGTCGT17200.025.89823312
CGTGTAG16800.024.37193316
GTGGTCG16350.024.34695242
GTCGTGT18400.023.96452914
GAGCGTC19000.023.80100410
ATCTCGG15000.023.54327436
TGGTCGC16850.023.49086843
TGTAGGG17700.023.25963618
GATCGGA20300.023.2048262
GTGTAGG18050.022.93340317
GTAGGGA18550.022.79978419
CGTCGTG19750.022.66846813
AGATCGG20750.022.284091
AGAGCGT21450.021.713059
TCGTGTA20600.021.40520915
GATCTCG17000.020.64195435
Produced by FastQC (version 0.11.2)