FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah6978i-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah6978i-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4896302
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC4050.016.10499844
GTCGCCG4250.015.876163545
GATCGGA5800.013.9860752
GCGTCGT5800.013.57603812
AGCGTCG5750.013.303102511
GTGGTCG5500.012.267693542
GAGCGTC6300.011.78473210
TGGTCGC5500.011.44996543
AGATCGG7500.011.4260191
GTCGTGT6600.010.90773614
CTCGGTG5500.010.63330538
ATCTCGG5600.010.4441736
CGTCGTG7550.010.13129513
CGTGTAG6000.010.12363916
GATCTCG6050.010.03935735
GGTGGTC7300.09.8592741
AGAGCGT7750.09.580639
GTGTAGG6150.09.51101417
TCGTGTA8600.08.63264815
AAGAGCG9050.08.2052458
Produced by FastQC (version 0.11.2)