FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n02_ah6978a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n02_ah6978a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7778934
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTCGCC14900.032.1483244
GTCGCCG16100.028.49485445
GCGTCGT19750.028.3641912
AGCGTCG20150.027.91367511
GTGGTCG17900.027.89284542
TGGTCGC17100.027.88166243
CGTGTAG18500.027.11832416
CTCGGTG15850.026.96243338
GTCGTGT20700.026.62754214
GTGTAGG18800.026.5657517
GAGCGTC21500.026.37058610
GATCGGA21200.026.1514112
TGTAGGG19600.025.48159818
GTAGGGA19900.025.32355719
CGTCGTG22150.025.2910313
AGATCGG22550.024.9087471
TCGTGTA22200.024.82822415
ATCTCGG16950.024.55153836
AGAGCGT23950.023.5810019
GATCTCG17300.023.27497335
Produced by FastQC (version 0.11.2)