FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah9724a1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah9724a1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6723280
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG8300.014.09590812
CACGTGG8000.014.06202432
AGTCACG8700.012.1547629
ACGTGGC9350.011.5504133
CGTGGCC10500.010.49964434
TCACGTG11250.010.39964731
GTCACGT11350.010.10978930
AGATCGG10500.09.86047651
CACACGT11250.09.59967413
ACACGTC11050.09.56981114
GATCGGA11550.09.5470492
ACGTCTG11650.09.2702816
CACGTCT11700.09.23045615
CGTCTGA12350.08.92702217
GGCCTTA12800.08.78876537
AGCACAC13550.08.30230111
TATCTCG10750.07.953218542
TCCAGTC14850.07.878520526
GAACTCC14950.07.82599622
GAGCACA14500.07.758357510
Produced by FastQC (version 0.11.2)