FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah9724a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah9724a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7803444
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG14150.018.60347211
GTCACAC15600.016.44152529
ACGTCTG15850.016.32414215
ACACGTC16200.016.24922413
CACGTCT16450.016.00227514
CGTCTGA16350.015.82493416
GATCGGA15750.015.5785711
CACACGT17650.014.659451512
TATCTCG18100.013.92198841
TCCAGTC19600.013.31569125
AGCACAC20850.013.27283310
CAGTCAC20000.013.04937727
GAGCACA20550.013.0286599
CTCGTAT20350.012.38270244
TCGTATG20300.012.30236945
CACACTG21250.012.28176731
CCAGTCA21950.012.09509626
AGAGCAC22500.011.8995088
GAACTCC21800.011.76549321
AGTCACA22950.011.76414528
Produced by FastQC (version 0.11.2)