FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah9722a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah9722a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7827782
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGATCGG20650.022.99891
GCACACG24150.019.37819512
GATCGGA25950.018.2116362
CACGTCT26400.017.8970915
ACACGTC26050.017.87844514
CACACGT26150.017.46592113
ACGTCTG26900.017.2299816
CGTCTGA28300.016.37761717
CAGTCAC29550.015.91314228
GAACTCC29650.015.85957322
AGCACAC29900.015.72686611
GAGCACA30050.015.64846310
TCCAGTC31050.015.36177426
AGTCACC31450.015.023313529
AGAGCAC31350.014.9277959
CCAGTCA31850.014.83463827
TCGGAAG33250.014.3485644
GTCTGAA34200.013.88117618
CCAGATC35300.013.38479434
CTCCAGT35950.013.26795925
Produced by FastQC (version 0.11.2)