FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah8643a1-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah8643a1-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8980173
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG48050.039.14547311
CACACGT51700.036.59941512
ACACGTC51600.036.4085213
GTCACAC51450.036.33974529
GATCGGA50550.036.2456361
ACGTCTG51900.036.24141715
CACGTCT52150.036.02453614
CGTCTGA53100.035.719216
AGCACAC54250.034.8377910
CACACAG53950.034.73919731
CAGTCAC56250.033.2787527
GAGCACA57050.033.2462779
TCCAGTC56950.032.8697125
AGAGCAC58350.032.5826878
CACAGTG57550.032.48792333
AGTCACA58250.032.2520128
GAACTCC58550.032.12536221
TCGGAAG60900.031.4838393
CCAGTCA59700.031.3179226
ACACAGT60800.030.89933632
Produced by FastQC (version 0.11.2)