FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah8038a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah8038a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11704144
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGATC14850.013.6359938
CCGATCT17550.011.5381499
ACGCTCT20400.010.5922461
CGCTCTT23550.09.3647632
CTTCCGA29600.07.07057486
TTCCGAT32800.06.859577
GCACACG11251.0913936E-116.19977911
TCTTCCG41450.05.59211645
CGATCTA14955.456968E-125.4178910
ACGTCTG14701.6370905E-115.356951715
CGATCTC15451.4551915E-115.242553710
CACACGT14352.6375346E-105.174031312
ACACGTC14251.1696102E-95.052451613
Produced by FastQC (version 0.11.2)