FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah7797j-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah7797j-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4189998
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG27400.039.9898811
ACACGTC28450.038.59306313
ACGTCTG28750.038.4251315
CACACGT28700.038.17849312
GATCGGA28250.038.161791
CACGTCT29500.037.14314314
AGCACAC30600.036.17556810
GAGCACA31100.035.811439
TATCGGG17350.035.27289639
CGTCTGA31250.035.20712316
CACTAGC31650.035.18869831
CAGTCAC31400.035.1105927
GAACTCC31600.034.8171721
AGAGCAC31900.034.7722748
TCACTAG32100.034.55521430
TCCAGTC32550.034.0774925
ACTAGCT32550.034.0083732
TAGCTTA32650.033.69747534
TCGGAAG33400.033.5522733
AGTCACT33000.033.54461728
Produced by FastQC (version 0.11.2)