H3TN2AFXY_n01_ah7797i-0718.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3TN2AFXY_n01_ah7797i-0718.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15485623
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCCGATCTCGTATG	98471	0.6358865897742699	TruSeq Adapter, Index 16 (97% over 40bp)
ACTTCCAGGGATTTATAAGCCGATGACGTCATAACATCCCTGACCCTTTAA	71878	0.46415956271181347	No Hit
TATTCGTTGGAATTCCTCGGGGAATTCGGTATTCCCAGGCGGTCTCCCATC	53553	0.34582399429457894	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCCCG	14265	42.742863	35
GTCCCGA	13800	42.112537	36
ACCCGTC	14830	41.26614	32
CCCGTCC	14945	41.17442	33
GCACACG	15440	40.991	11
TCACCCG	14930	40.989742	30
CACCCGT	15010	40.801254	31
ACACGTC	15590	40.755356	13
ACGTCTG	15655	40.557396	15
CCGTCCC	15155	40.381187	34
CACACGT	15725	40.305313	12
GATCGGA	15600	40.241463	1
CTCGGGG	6285	40.201344	16
CCCGATC	12565	40.199436	38
CACGTCT	15920	39.882286	14
CGTCTGA	15920	39.769226	16
TCCCGAT	13855	39.347122	37
GGCGGTC	8060	39.052494	38
CCTCGGG	6510	38.915577	15
AGCACAC	16330	38.798412	10