FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah7797a-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah7797a-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8973310
Sequences flagged as poor quality0
Sequence length51
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCACACG20600.026.9771711
ACACGTC21800.026.00822613
CACACGT22150.025.19095412
ACGTCTG22950.024.41087315
CACGTCT23800.023.6335914
GATCGGA24650.022.8286881
CGTCTGA25500.022.41107216
AGCACAC26400.021.81738510
GAACTCC26200.021.21129421
CAGTCAC26150.021.16557327
GAGCACA27400.021.1033619
TCCAGTC26650.020.76858725
TCACATG28900.019.5408130
AGTCACA29500.019.29590428
CGGGGGT4900.019.2850144
CACATGT29200.019.26299531
GTCACAT29650.019.12240429
CCAGTCA29500.018.99083126
ATCGGGG10700.018.7142742
TCGGAAG32650.017.9894713
Produced by FastQC (version 0.11.2)