FastQCFastQC Report
Fri 13 Jul 2018
H3TN2AFXY_n01_ah6978i-0718.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3TN2AFXY_n01_ah6978i-0718.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4896302
Sequences flagged as poor quality0
Sequence length51
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTAGGC12750.026.82267833
GCACACG12800.026.71790111
ACTTAGG12750.026.46974832
GATCGGA12600.026.2577461
ACACGTC13350.025.11156313
ACGTCTG13950.023.70892315
CACACGT14350.023.67520712
CACGTCT14150.023.53282214
CAGTCAC14700.022.3462327
AGCACAC15250.022.27798310
CGTCTGA14950.022.12304316
CCAGTCA16350.021.19198626
AGAGCAC16500.020.5904668
GAGCACA16450.020.5160669
TTAGGCA17200.019.8830934
AGTCACT17100.019.60464128
TCCAGTC17000.019.58761225
GAACTCC17600.019.0476921
TAGGCAT17000.018.7935235
CACTTAG18200.018.54336731
Produced by FastQC (version 0.11.2)