FastQCFastQC Report
Wed 4 Mar 2020
H3T5LAFX2_n01_PpPLATZ_Col_B_o.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3T5LAFX2_n01_PpPLATZ_Col_B_o.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3191264
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGGG3600.00235676888.74999553
ATGGGGG5006.6410855E-47.699996542
CGTGGGG4150.0084780897.59035856
TGGGGGG6251.1963789E-47.2801111
CAGTCAC25800.07.189919570
AATGGGG7855.1235347E-67.133754741
ACTCCAG39000.06.551279570
CCAGTCA28400.06.531687369
AGGGGGG6500.00147663736.4616371
TCCAGTC31300.06.373799370
CGTCTGA66900.06.173390469
GTCTGAA69150.06.023135770
CATTCAG20751.8189894E-125.903611733
ACGTCTG72400.05.897787668
CTCCAGT36400.05.86538270
TCTGAAC62000.05.81451370
TGACACC7250.00501616865.79310127
GAACTCC48050.05.7544268
CTGAACT56900.05.65904870
AGTCACA27950.05.6350670
Produced by FastQC (version 0.11.5)