FastQCFastQC Report
Wed 4 Mar 2020
H3T5LAFX2_n01_PpPLATZRI_Col_B_o.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3T5LAFX2_n01_PpPLATZRI_Col_B_o.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4183321
Sequences flagged as poor quality0
Sequence length76
%GC35

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGCGTG2900.00395260669.65516154
AGGGGGG7051.1342672E-78.4403111
CAGTCAC36250.08.39998969
CTCCAGT54000.07.388880770
AGTCACA41800.07.200947870
CCAGTCA42850.07.18785668
TCCAGTC47300.07.17758170
ACTCCAG59950.06.83068470
GTCACAT35550.06.497882469
GAACTCC73200.06.31146769
CATTCAG26350.06.110049733
TCTGAAC98500.05.79187170
CGTCTGA105050.05.76391570
AACTCCA80800.05.674498670
ACACGTC132600.05.542979770
CTGAACT87300.05.532639570
CACATTC34750.05.438842369
GAGCACC9707.070262E-45.41236570
ACGTCTG111400.05.40394369
TGAACTC84700.05.371894468
Produced by FastQC (version 0.11.5)