FastQCFastQC Report
Thu 23 Apr 2015
H3NH5BCXX l02n01 gfp_5march.34100000008ac7.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3NH5BCXX l02n01 gfp_5march.34100000008ac7.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1636
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGATAAACGAACTAATTAGACACCTCCTACAGATATAATGGTAATTCAGA20.12224938875305623No Hit
GGCTCCAGGAGTCGTCGCCACCAATCCCCATATGGAAACCGTCGATATTCA20.12224938875305623No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.2)