FastQCFastQC Report
Tue 14 Jun 2022
H3NGLBGXM_n01_GDO_A1_PS_ASV1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3NGLBGXM_n01_GDO_A1_PS_ASV1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72434595
Sequences flagged as poor quality0
Sequence length26
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGTTGAGCTATGCTGGAATTCTCG4013730.5541178217397363No Hit
CAACTAGAGCTATGCTGGAATTCTCG2674170.36918408945338893No Hit
TTCGAAGAGCTATGCTGGAATTCTCG2285380.31550946063824886No Hit
TGGCCAGAGCTATGCTGGAATTCTCG1816180.2507337826628285No Hit
TGACTAGAGCTATGCTGGAATTCTCG1557910.21507816810461908No Hit
ATAAGAGAGCTATGCTGGAATTCTCG1138010.15710863020632612No Hit
TAAACCGAGCTATGCTGGAATTCTCG870360.12015805431092698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)