FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_negcon09_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_negcon09_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4460
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTTGATCAGCGCTTGCAACGAACCATCAGCCGCCATCTCAACGATGAT80.17937219730941703No Hit
GGCGATGCAGGGCGACGCGTTCATTCATCTCGCCATCCAGCGGTTGGCTG70.1569506726457399No Hit
AGTTCAACCATTCATGGAACGGCAAATACCGCCGCGGCGCGGATCTGGCG60.13452914798206278No Hit
ACCATTGATAGTACAAATAATGAAGCGAAAAGGCTCATGCAGCAAGGAGA60.13452914798206278No Hit
AGATGTTTCTCTACCAGCCCGAACAGGCCGAAGTGATCCAGCACGATTGA60.13452914798206278No Hit
GTACCAATTGCTGCACGCCGGCGGCATAGGCGCGGTCGAGAACGGCCTGG50.11210762331838565No Hit
AAATGAAGCATTTCGCGCGCGGCTCAGCGAATCCACGCCTTGCGTGAGCA50.11210762331838565No Hit
CCTTGGGACCGACTACAGCCCCAGGATGCGATGAGCCGACATCGAGGTGC50.11210762331838565No Hit
CGCTTTCTGCTGCTCGTAACAGGCGCCTGGCTGGCCATTTTCACACTGAC50.11210762331838565No Hit
CCGCGCAGCAATTCGCGCAAGTCGGCTGGCTGGGTGAGGGCGGCGTCGCC50.11210762331838565No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.11210762331838565No Hit
GCCTGCTGCTGGCCGGCGTGACGTTCATGGCCATCATGGTGCTGGCGCAA50.11210762331838565No Hit
CTCTCATAGCATACTGTTTGTGATTTTACTGTAGTGCCATGTCTGCCTCA50.11210762331838565No Hit
GCCCAGGCTGGCCCGTTGCTCGGCATTGAGCCCCCAGCGAATGCCGGCAC50.11210762331838565No Hit
TCAGTAGTGGGTTCAAACGTAGGCATAGTGGTCTTCCTTCTGGTGTGCGG50.11210762331838565No Hit
CTTCCATCTACCCGGTTATGGCGCAGACGATCCACCGCCCGGTGGCGCGT50.11210762331838565No Hit
TTATATTTTATACTCAGTTTATCAAAAGAAAAGGAGCATGTATATGCAAA50.11210762331838565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)