FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_negcon03_CC_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_negcon03_CC_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2794
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCACAACGATCGACCCATGAAGGCAGACGACGTGGCCACCCGGCAGAC70.25053686471009307No Hit
ATGGTGTCGTCCGCGTTCCGCTCAATTGCCGATGAAGGCGGGCCACACCG70.25053686471009307No Hit
CAATATGGCGGGAAATAACGCAACGAGAAGGCTATTACAACCGCTGCGAA60.21474588403722264No Hit
GATCTCGCGCGGTCACGGTCTGGTGGCCGATGACGCGGTCGATTTCGTTC50.17895490336435219No Hit
TCTCGGCACTCAGCAACCAGTGGCCGAACCCGAACCACTGGGACACGACG50.17895490336435219No Hit
GCCTGGTCGTTGAGCGCCAGGATCTTGTGCGCATAGGCGACAAGCCGCAC50.17895490336435219No Hit
CATTGAAGTAGAACGTTCGCTGCGCGTACTCGACGGCGCGGTCGTTGTGT50.17895490336435219No Hit
CGATAACGGCGCGCATCAAATCCTGCGTATCGTCGGTGAAGGCGAGGTCG50.17895490336435219No Hit
CAATACGACGGTGTTCCCGCATGCCAGCGGCAACGCAATCGCGCGCACGG50.17895490336435219No Hit
ATGGCGAGCTCAGCGTGCGCCAGAACCTGGCGCTGCACGCCCAACTGTTC50.17895490336435219No Hit
GCTCTACCTCGAGGCGTGGTGCCTCAAGGCTGAGGACCTGCGCTTCTTCC50.17895490336435219No Hit
TGTGCGCAGCGGTGGACGCCTTGGCTGAGGACGACCGCGCGCGTGTGCCC50.17895490336435219No Hit
CCCATGAACAGACGCAGTTGCCCATCGGCATCGAAGCGATCGGCGCCTTG50.17895490336435219No Hit
CGTTGAAGTGTTCCCAGTTCGCCCACTTGGGCACGAGGTTGGAGTTGGCG50.17895490336435219No Hit
CCAAAGCAGTAGCCCAAGGCATCGAAGATGCTGTCGGCAAAAAAGAGCAG40.14316392269148173No Hit
CCACCTGCTGGGTGCGATTGCCGAAGTGCTGGGCGATGCCGCCACGCCCG40.14316392269148173No Hit
TCCAGGAACTGCTCAAGGCCAAGGACGCCTGGACGCTGTGGGCGCCGATC40.14316392269148173No Hit
ATCAAGGATTGCTATACGGTGCTCGGTTTCGTGCACCACATGTGGCAGCC40.14316392269148173No Hit
GCTACAAGACGCGCGAACTGGCGCCCGTCGAGTGCGACTACCGCGGTTAT40.14316392269148173No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40.14316392269148173No Hit
ACATGTACCCGGCCAAAGAGCAGCAGGTGATGGTGTCCAAAGCCATGGCG40.14316392269148173No Hit
GATGACCGCTTCCTCGTCGTTCATCGGCGGAAAGGCGACATGGCCGCCCT40.14316392269148173No Hit
CTCCGTGTTCTGCCTGGATCAGGCGCAGGCGCGTGAGTCGCGCCGCTGGC40.14316392269148173No Hit
GTCATCACCAACGTCCTCGGCAGCGCCCAGGTGCTGGCGACACGGCAGTA40.14316392269148173No Hit
CTCCTTAGTCTTCCATCGTTGACAAATCGCCCGTTGGCAAATCTAATTCC40.14316392269148173No Hit
CCCGTCTCGTCGCACGACGACTCGATGCCCATCACCAGCGGTTCACTCAC40.14316392269148173No Hit
ACTATAGCGCGTCTTTTTTCACAGGTACTGCTATGCGTGTTTTACTGGCC40.14316392269148173No Hit
ATGTGGCCTTCGAGGATGATTTCGGCGCCGGCCGGCACTTGCAGTTGTGC40.14316392269148173No Hit
GCCCAGCAGGACGAACGGCAGGTTGTGCGGACGCATGGGGTCGCGCTTCC40.14316392269148173No Hit
GGAAGAAGAGGATCAGGAACGGCTCAGTGCTCGCCAGCAACGACGGTTGG40.14316392269148173No Hit
AGGTAGTTGATGGCCAAGGTCGGGTCCGGCTGCGTGGTGTTGATGCCGGC40.14316392269148173No Hit
CTTGTACGCCGCCGGGATCTCATCGACGAAGGCCGCGGTGTCGCGGTACT40.14316392269148173No Hit
TCATTGTGCAGCTGTTCTACATCTACTTCGTACTGCCCGACATGGGCGTA40.14316392269148173No Hit
ATGTACGTCTTGGCGTACTCGCCGGGGTAATAGCCGCTGCTGAACTGCTG30.10737294201861132No Hit
TCGCGGTAGTAGGTGTGGTCGAAGCGTGCGCCTTCGGTGTACGGGTACAT30.10737294201861132No Hit
GCACAACATCGACCGCACCAACCGCGCGGTGGATTACATCTTCGCCCACT30.10737294201861132No Hit
CGACTGAGGTGCGAGGGCCCAAAATGCCATACGTTGTGCTCACCCCCCTG30.10737294201861132No Hit
GCTACAACAAGTTCCATCTGTTGGTGGCTGAGGTTACAACCTGCGGCGAC30.10737294201861132No Hit
CTCGTCATAGGCCAGCTCGACACCTTCGCGACCGTGATCATCCAGGTCGG30.10737294201861132No Hit
GTACTAGATATCTAACCTAGGTCCATTATCTGGATCAGGGACAGTGCCTG30.10737294201861132No Hit
TTTCTGCGGTGATTGCTCGTGGCACTCCAGGTTTTTCCGGTGCCGACCTT30.10737294201861132No Hit
TGCTGTCCTTGTGCGCCAGTTCGCCATCCAGCACGTAGCTGATGATTTCC30.10737294201861132No Hit
CGTCCGCACCCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCA30.10737294201861132No Hit
CCGCTGTGCGGCCTGATTGCCGGCTACAACGCCCATGAGGCGCCCAGTGG30.10737294201861132No Hit
TCACGCATGCGCTGCCGCGCGAGTTCCGGGCCGGTTTCATCGATGCGGTC30.10737294201861132No Hit
ATCTGATACATACTCCCAGTCAAGCATAAAAACAGAGTGAAGGGTTTGGA30.10737294201861132No Hit
ACAAACAAGCAAAATAAGCAGCGATTAAACGAACTAACGAACGCTACGGA30.10737294201861132No Hit
ACTGAGCCTTGTTCGCCTCCGACCGCTGAGCGAGCGGCATGCGTCCGCTC30.10737294201861132No Hit
GTACAACAGGAACGCCAGTCCTTCACACCAGCAGTACATCATGAAATTAC30.10737294201861132No Hit
GGCCATCACCGAGGTCGAGGCCTACGTCCCGCCGGCTCCGAGCGTCATCC30.10737294201861132No Hit
GTCGGCGGACGCCTGCTCAACCACTGCATCACCCGTCCGAACAACAAGAC30.10737294201861132No Hit
GTACTGTCCACACAGTACTGAGTCTTCATACCGCCAATCACCACCCCAGT30.10737294201861132No Hit
GATAACACCAATACCTATAGCTACGACGCGGCCGGCAATCTGCAGGACTT30.10737294201861132No Hit
GGTCACGAGCGACGAGATCACGACCGAGACGACCGATCCGTCCATCTACG30.10737294201861132No Hit
TTCATCCGCTGAAGGAGCAGTAGTGGCTTGCAGATCAGCCCTCGTCCGGG30.10737294201861132No Hit
CCGTCGCCAGCATGGCCGCGGCGGCCGGTGCTGACGCCGTCGAGCTGAGC30.10737294201861132No Hit
GCATTGCCCCATGATGCCGCGTGCCCCCGCACGTCGTCATCGATGAGGGC30.10737294201861132No Hit
ATGTAGCATCGGTCGAAGAAGAGCGTAGCTGGCTGGTGAATGCCATCGAT30.10737294201861132No Hit
GGGATGATGTCGATTGAAGCCGACATCGAATCCCCGCACGAAAGCGCGCT30.10737294201861132No Hit
GGATTGTTGTTTACACCCTGTCCGAAGCGGTATATATTCTCTTCTAATCG30.10737294201861132No Hit
GTCGAGAATGCTCGCCGCGATACCGGCCGGTTCGTCGGTAGGGTGGTTGG30.10737294201861132No Hit
ATACAAGTGGGGTTGCCAGTCTGCATTGGCGATGTTGCTGCCGCACGGCC30.10737294201861132No Hit
AGTACTGACTGATTCGCAGCATGGGCTATTCCTTTTTCAGTGCGCCGGCG30.10737294201861132No Hit
CTTTTGTCCTGCCTGAGCCCCTGTGCTTTTCCTGCTCTGTGTTCCTTGCT30.10737294201861132No Hit
GATCATGCCACATCGCTAGAACTGAACGGCGGATCTCCTGTTCTAGGATA30.10737294201861132No Hit
ATGGAGGAGCCGTCGAACATCTTGCCGACTTCGAAGAAGTCTTCGTCCAA30.10737294201861132No Hit
AGCCGACACCGAACCATCCGGGCAGGATGATGCGCGACTGGGTCCAGCCG30.10737294201861132No Hit
AGCATGCCGTGCAACTCACCATTGCCCGACAGCACACGGCGCAGTACGTA30.10737294201861132No Hit
CGCATGGCACGGCGCGAGGCATCGAGAATGGCGCTCGGATCGCCGCCGCC30.10737294201861132No Hit
GCGCTCGATGCATGGAATCTGCACCAGCCCTCCGACCGGGTCACAGGTCA30.10737294201861132No Hit
AGATGTTCTCGAACCAGCGCAGGCGCAGGTTGGGGTGCAGCGGCTGGCCC30.10737294201861132No Hit
CTGCAGGACGGCTTTCCGGAGATTGACGTCGACGACGTCTGGATCGGCAA30.10737294201861132No Hit
GTACTTGATCTCGACACCCTCGCGGTCGGCCAGCTCCGTCGCCTTGCCCT30.10737294201861132No Hit
AGGTGGCCTTGGACATCTGCCCGAAGATGTTCTTCAGCCCCGCATTCTGG30.10737294201861132No Hit
TTTTTGCATTTCTGAATCAGCAGGTTTTTTATGAGTGAATCGACTTCACG30.10737294201861132No Hit
GAGTAATCACGGATGCGGCGGTCATGGCTTTGCAAACGCACCGATAGCGC30.10737294201861132No Hit
GATGAGTGGGGCACGAGCAGGGGGCAGCGCGCTAGCCGACGCGCCCCCTG30.10737294201861132No Hit
GTGCTGGGCGCGCTTGCCACCACGGTGCTCGGTGCGGGCGCGATGTTCAC30.10737294201861132No Hit
GCATTATGTCTTCCAATATCAGTTCTAGTGATGAATAGTTTTTCTGTGTC30.10737294201861132No Hit
GCGTCTATTCTTCATCAAGCGGATGCTCTCTTTTATGTCGTTCACTACAA30.10737294201861132No Hit
CCGTCAGCATCTTCGGGATGCTGTTTACCTCGGTGGCCGAATGGCTGTTC30.10737294201861132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)