FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Tr3_C4I4b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Tr3_C4I4b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2131
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTGTTTCGGTTGCGTTTATCCCAGTGAGCCTGGTGGCCGTCATCTCA90.4223369310183012No Hit
CCCCCGGCCGTTGCAGCTTGCCCTGTGTGCTGCTGCTGGAGCAGGAACCG70.328484279680901No Hit
CCATATATCTCATGGCCTGCAGGCGGAAACGTACGGATTCAGAGGTTCTC50.2346316283435007No Hit
GCTTTGATAAGAGAATGTATCGAAGAGATTGGCTGTTCGGTTGATATCGG50.2346316283435007No Hit
TTCGTGCATCTCGCTTAGACTGGGACAACAGCACAAAGGGTTAAATTGCG50.2346316283435007No Hit
CGGAAAGCGTAGATCGCTTGCTTGGGGTCACCGATCAGGAACAGGCCGCT50.2346316283435007No Hit
ATAATGCCTAACACAACGGCAATTAAAGAAATGTATAAATGCTCCCACAT50.2346316283435007No Hit
GATAAGCAAAAGGCGCGTTTTTATAGTCACGATACGCAGAAACAAACGCT50.2346316283435007No Hit
ACTACGAAGTGTCCCGTGGCCTGTTCAAGGGCCACGCCACCGTGCGGGCC50.2346316283435007No Hit
TCATTGACCGTTCGCCGCTGATGATTGCGGTATCGTCCGGCGGCCGCTCT50.2346316283435007No Hit
TGGCGGTGGTCGCTGAAGGGGTGGAAAACGAAAAGCAGATGAAATTGTTA40.18770530267480057No Hit
CCCACGGGCTGGGGACGCCGGCGATCAACGCGCCACCGATGGCGATCAAC40.18770530267480057No Hit
CCATTGATCACCTTGCTGCGGCTGAACGGCTCGCCCACGCCGGAGCGCTT40.18770530267480057No Hit
CCAAAGAACAGTTGTATGAATAAAACGATTCCTGTCCAGCTCAATCGGTG40.18770530267480057No Hit
CTACAGGTCTTTGCCGATATCTTCCAGTGCACGCTTGAGATTGTCGATGT40.18770530267480057No Hit
GCCTGCTACCGAAGAGGGCGAAGAGCGCCAACACCGCCGCATCAAGAGTT40.18770530267480057No Hit
GTACGGGGGTACATGCCGATTCCGAGCACCGGCCGCGCCCGCCTGGCGGC30.14077897700610043No Hit
CGTTTAGCGTTGTCATCGCCAGAAGATGGGGTGTGTGAATGCGTGTGCGC30.14077897700610043No Hit
GTAATGGCACCCAGCTAACCAGTGCAATTAAAAAGCTATTACATAGCCAG30.14077897700610043No Hit
ATTTCATCTTCATACATATTTTCAAAATAATTGAGCTTGTCTTTTTGCGC30.14077897700610043No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30.14077897700610043No Hit
GTCCAGGATGGTCTCTGCATCGGCCGCGACACCCAGGCGCAGGTCGACTT30.14077897700610043No Hit
TGGATAAAGTGCGCGGAGTCTGGCAGTGGTTCAAAGGCCTGATCGCACAG30.14077897700610043No Hit
GCCCAGCAGAGCGGATTTTGTTTGGTAGGCGCGATTGGACTCGAACCAAC30.14077897700610043No Hit
GGGTGTAGATGTGATCGGTCCACTTGTACAACGCCGCCAGGCGATAGGCG30.14077897700610043No Hit
GTCGCAGGGTTGCACCAAAGTCGGTACGCAAGAAATGGGCGACGCAGTAG30.14077897700610043No Hit
GTTTTTGATCAGACAGAAGGAACGTTGTTACGTCCGTATAACACGCATGA30.14077897700610043No Hit
GCTTCAGCCTTGACCCACACCGGGCTGCGGCCGGTCCACTCTTCGGCGAT30.14077897700610043No Hit
ACGTATCAGGGTCAACTGTGGAGCGCCCGAAGGGTAAGCCGTGTAAGGCG30.14077897700610043No Hit
CCGCTGTCTATACTCGCCATTGAATGGAGTTAGCTGATGACGCCCGACTG30.14077897700610043No Hit
GAGTGAAATAGATCCTGAAACCGTGTGCCTACAAGTAGTCAGAGCCCGTT30.14077897700610043No Hit
CTACCTGCGCGATTGCGCGCATCAGGTGGGCATCAGCACCGAGGAAGTGG30.14077897700610043No Hit
GAAGATAACATACCGTTAGTGTAAAGGAAACGAAGCAAAGCGGAAACTGG30.14077897700610043No Hit
CTGCGTGCGGCGCGTGGGCGGCAGACAACCCTACCCATGACAGGCTCACT30.14077897700610043No Hit
GCCACGAAGGTGCCGACGCCCTGCATGCGCACCAACAGACCTTCGGCGGT30.14077897700610043No Hit
AAAGAAGTAAGATCCACAACAAAAGATACGCTTAAAGAAGATGACGAAGT30.14077897700610043No Hit
GCCGTATACCGTGCGTTATTATGCCTTAGGGGCAACCACGCCAGGTACTG30.14077897700610043No Hit
GTTCGGCACGTGCGCCGTCGCCTTCGCTGTGCTCGAGCTGGTCCAGTGCG30.14077897700610043No Hit
GTTCCAGCACTTCAACCTGTGGTCGCACATGACCGCGCTGGAAAACATCA30.14077897700610043No Hit
GCTAGGGATCGTCGCCTAGGTGAGCCGTTACCCCACCTACTAGCTAATCC30.14077897700610043No Hit
GTTGTACATCGGTGGCATCGGCCTGGCCAAAGGGTACTGGCGTGATGAGG30.14077897700610043No Hit
CGCCCGCAGGCGTCACGGCGTTCTGCGATTGCAGGCTCTGCACGACCTGC30.14077897700610043No Hit
TTCCCGAAGGCACCAATCCATCTCTGGAAAGTTCATTGGATGTCAAGGCC30.14077897700610043No Hit
TCACCGATGTGTCGGAAACCCTGTTCGTCAGCCAGTCCACGGTCAGTTAC30.14077897700610043No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)