FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Tr3_C12I2c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Tr3_C12I2c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3180
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAAGCATGGATTCGGACATCAACGCCACTCCCGAACCGGCAATCACAC80.25157232704402516No Hit
CGAATACCCCGACCTCGGCCATTTCCCGATGTGGGAGAAGCCGCAGAAGT70.22012578616352202No Hit
CCATGGAAAAGTGCAAACGAACGCCGCCCGGATCTTCCAGGGCATGGGCC70.22012578616352202No Hit
GGTGTCTTGATCTCGAACGGGTAGGGCGCCAGTTCAATCTGCGCGCTATG60.18867924528301888No Hit
CCTTAGAACCATTCATCCTGCATCCCCAGGCACGTATCGTCCCGTGCTTC60.18867924528301888No Hit
GGGCATCGGCATCCTCACCACGGCCGAGAAGAAGGGCAAGTTGCGCGAGG50.15723270440251574No Hit
GGTTATTATTTATGACAGCATTAATGATCAGCCTGCTACCGAAGTGGGTC50.15723270440251574No Hit
GAGATGTCGTACTGATATGAATCTGCTGAGTGACCATTCGCGCGTTACGG50.15723270440251574No Hit
AGCATTACCCGCCGGTGTGGGCGCGCCGCTTCGCGGTGGACTTCAAGGGG50.15723270440251574No Hit
CTAATACGTCCATTACATCACAGCCATCACGAAGCAAAATCGCTGCTGCG50.15723270440251574No Hit
TTCTTGATCTTGGGTATGGGAGTAAGGGCAACCATGGTTGTATCCCGAAA50.15723270440251574No Hit
CAGGAAGAGTGCTTTTTGACGCCGAGGGTGTCTATAAATATGCCGTCTAG50.15723270440251574No Hit
GATATATGCAGTGATGCTGTGGATAACCTGCACATTATCCATAAAAAAAA50.15723270440251574No Hit
CCTCGTAGGCCATGCGCAGGCCCGAGGCGCCGACCGGGTGTCCGAAACAC50.15723270440251574No Hit
GTATTATATGTCGTACCAGAAATATCCTTCGCATTGGCCTGAGAAGCGAT50.15723270440251574No Hit
CCTTCATAGTGCTCAACGACGCCGACCTGGACGAAGCTGTCAAAGCCGCT50.15723270440251574No Hit
CTGTATATTCCTTGTGATTTAAAAACCTTTGCACTGCAAGTTGCAGCAGG40.12578616352201258No Hit
CAGGTGGGACCACCGCGCTAAAGCCGCCAGGCAAATTCTGTTAATCTGTA40.12578616352201258No Hit
GTCTCATTCAGACGGTTGATGAACGGCACTCGGCCGCGTTGGCGTAGTCT40.12578616352201258No Hit
TCGTAGGCCGGGGTTTCGGGCGACAACGTGGTAGACAGCAACGACTCGCG40.12578616352201258No Hit
GTAATACCCGGCACGACCTGGAACGGAATGCCATGGGCGGCCAGTTCCTC40.12578616352201258No Hit
GTTTTTCACCCACCCTGACGGGCTAATACGACGCGCAAAGCGCATGACCG40.12578616352201258No Hit
CCGCTGAAGTGCGCGGTAATCGGGTCGGCCGCCAGGCCCTGGTCACCGTG40.12578616352201258No Hit
TCACAATGCCGCTGGCGTCCCAGCCGAGAACGCGTGGTTCTGTCAGGCCG40.12578616352201258No Hit
CTCCTGGGACTTGCGGCGCTGGCTACAATACCTTGCGGTTCGACGATGAG40.12578616352201258No Hit
GCTCTACGCGAACGACGCGCTCTTTCCCCTCAACCTCAAACCGCCATTCA40.12578616352201258No Hit
CTATGCAGCGGTTCATTCTCCAGCGCCTGGCAGGAGACGACCAGTTTTCC40.12578616352201258No Hit
GCTTCTCGGTGGGCGGTGAATACACCGGCGCGTCGATTTTCGTTGCCGAG40.12578616352201258No Hit
GACGATGATGCCGCAGCGCGCGTAGGTACTTTTACCAAGGCAGATGGTCA40.12578616352201258No Hit
GCCGAGGTCGCCGCATCCATTGGCGCGGGCCTGGCCAAAGCCACCGTGGC40.12578616352201258No Hit
GGGCTATATCGGTCAGGCGCTGGGCTATGCCGACGTGCTGGCAACTGCGT40.12578616352201258No Hit
GAAGAAGACGAAGATTTGATGCCGCTGCAGGCGTTCCTCTCCCACGCGGC40.12578616352201258No Hit
CTTCCCAGCCGGCCATACGCGCGCTCAGTCGCCGCTGAAGCTGCCAGCAC40.12578616352201258No Hit
CTTCAGCACCCGCCCCACGGCCGCCGGGCACTTTGAAGCGCTGCCTGGGG40.12578616352201258No Hit
GTACGGCCTGTGCTTTCTGCTGCGCGTTGAACTGGCTGAACCCCGAGATG40.12578616352201258No Hit
AACTGGCTGCAGGTCTGGCCGTTACCGCAGCGGTTACCAGCTCGGTTATC40.12578616352201258No Hit
CGGTAGGGTCGCCTCGACCCTGATCGGGTTGGCGCTACCCTGGCATAGGG40.12578616352201258No Hit
TGGCCGCTCAGCATGCCGTGCTATATCGAACAAGGCCAGGAGATTGAACT40.12578616352201258No Hit
ATCCCCAACACCACCGCCATGGCCGTCAAGGCGGCTGCGGAAATGGGCGT40.12578616352201258No Hit
GCCATAGGCAATATTATCGGTTCAAACATTTTTAATATCGCCATCGTGAT40.12578616352201258No Hit
ATATTGGATAGAGGCTTATATAAGGCGTTAATTTTCTTTTAGGGAGTTAC40.12578616352201258No Hit
CGCTACCTGCGCGGGGTACACCTGAGCCTGTTTGGGCATATGGTCGCCAT40.12578616352201258No Hit
ATAAGTGATGATTTCCATATCGCGGTGCGAGTGCTGGGGAAAGCCCGTGC40.12578616352201258No Hit
TGATACCAGTATGGAAGGCGGCTTCCTTGCGCGCCGTCGTCACCTTCAGG40.12578616352201258No Hit
ATATACGCGCCCAGCAGACGACTCAGGGCGGCAAGGCTGTCGATATGGGT40.12578616352201258No Hit
CCTTTGCCGCACAGGCAATCTCGGTTGGCAAAATGCTGGAATGGGATCCC40.12578616352201258No Hit
ACCATAAACACGGGCTGGCGCGACAATGGTCGCGGGTCGGGCGTGTGGGG40.12578616352201258No Hit
AACCTGATGGCCTTTGTCGAACGTAAACTCTTCACGCTGAACACCGGGCA40.12578616352201258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)