FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Tr2_NCI3b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Tr2_NCI3b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4384
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGGCAATCCATGTACCAACAAGTGCACCTACTGCAATTAAGATTAA70.15967153284671534No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.15967153284671534No Hit
GTGCTGATCGACCACACGCAAGACCGCGAAGGCAAGAACCTGCTCGACGC60.13686131386861314No Hit
AACCTCGGGCAGGCGGGACTCGAGGAATGCCGCGCCAGCCTGAAAATGGT60.13686131386861314No Hit
CAGCACAATCCAGCGGCTGATCGGTGTCTGGTAGGACATGGCCTGCATGA60.13686131386861314No Hit
ACTCAAGCCGCGCGCGCTGACCGTCCTGCAGCGCGCCACCGACAACACGC60.13686131386861314No Hit
TATATCCAGAGCGTCAACCGTGTGCCGATGTTGACGGCCGAAGAAGAACA60.13686131386861314No Hit
ATCTGGTCAAGGAAACGAGTACCGGCCAGACGATCAAGATCAAGGCGCTC50.11405109489051093No Hit
CTTCGAAAGCTTCCCGCCTACCAGCCTGCAGATTTCCAATATCCACGCCG50.11405109489051093No Hit
TTGTTAAACCGATGACAGAAATACCGGCAGCTAGTCCATCAAGGCCGTCA50.11405109489051093No Hit
ACATCCACCCGCGCGTTGAGCTGGCGCATGGTTTCGTCATCGAACAGTTC50.11405109489051093No Hit
CAACGGCTCCAGGCCCCGGGCGCAAGCTCCGGGGCCGGGCCCCGCGGTAC50.11405109489051093No Hit
GACAAGAGCGTTACCAGCGGTTTCGTGCTGGTGCTGCTGTACATGAAAGG50.11405109489051093No Hit
TTACTAGAAAGCGTGCTGGAGGGAGTAAATCATGAAAAAAAGACCCCGCC50.11405109489051093No Hit
GACGTCAAGGGCGACGACGTGGCCTTCGAGTGCGTCCGGAGAGGCGTGCT50.11405109489051093No Hit
GGCCACGCGATCAGCAACGGCGAGGCTGCCGCCAGGACGTACGGCTCGTC50.11405109489051093No Hit
ACTTCATCGAAACCCTGCAACGCATCGCGATTGACGGCGTCGTGCCCGAA50.11405109489051093No Hit
GTGTCTATCTAAGGGCGCCAGAATCAGGCCTGTTCATCTATAGATAGCTC50.11405109489051093No Hit
ATCGTTAACCGCAACTACCTCAACTTCAGGATTGTTTAATGCTGCACGAA50.11405109489051093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)