FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Tr2_NCI1b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Tr2_NCI1b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3804
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCACGCCTTGGCTCTTGCCGTTCGTGCCCTTGATGTGCGAGCCGAGCG80.2103049421661409No Hit
GGGCCGGGCCGCGCCAGTTCGAGTCGAACACATCCTGCATCGACCAGTTG60.15772870662460567No Hit
TCACCAGCTCGGGATCGATTGCGCGCAGCGTATCCAGATAGTTTTCTTTC60.15772870662460567No Hit
GTCCGGGCCGGTAGGCTCGGTAACCTGGACTTCGGCGCGAATACTCGACG60.15772870662460567No Hit
GTTCACCGGTGGCGCGACCTTCGGCGATGGCTTGGTGGTAGAGCGGCGTC60.15772870662460567No Hit
GTGCGACTGGAATCAGCCGATTTAACGCCTCAGTACCGCTGCGGATGATG60.15772870662460567No Hit
TCCTGCAACCGCTGTACTTCGTGCTGCCCGACCTCAAGCGTCTGTTCGAG60.15772870662460567No Hit
CGGTAACAACAACACGATCAATGCGAACAACGCGTTCGTCGTGGGCAACG60.15772870662460567No Hit
ATCCGATTGCCGATGCGGCGCGGGCCATTTTGGACGGCCACTTCGTGCTT50.13144058885383808No Hit
CTCTACGCCGCTGCGACTCTCTATCAGGGCACCCGCCTGGCCACCGGCGC50.13144058885383808No Hit
AACGCCAACCGCGCCGCGCGCATTGAATGGGAACACATTGTGCCCGCATG50.13144058885383808No Hit
GTTGTTCGTGCGCTGCGACGTGACTCAGGAAGCCGAGGTGCAGCAATTGA50.13144058885383808No Hit
GCGTAGAGCTGCTCCGCGTCGAGGTCGGCGTCGAACGACGGCATCAGCGT50.13144058885383808No Hit
GCGTAGAGCACCGGCGCGCCCAGGTCGCCCAGCGCGAGCTGGAAGGTCAC50.13144058885383808No Hit
GCCTGAAGTGATTGGCGCGGCGATCGATGCGGCGCGTCAGACCTTCGAAC50.13144058885383808No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50.13144058885383808No Hit
CCTATAACTCGCCGACCTGGGGTGGCTTCTCGTTCCGCGCGCAAGCCGGC50.13144058885383808No Hit
GACCCAGGTCGCCGGGCTTGAGCTGCACGATGCGGTGGTCGTAGACGACC50.13144058885383808No Hit
CGACGAGCGTGTAGCCGTAGTTCAGGGCGCCGACCTTCTTGTCGGGGTTC50.13144058885383808No Hit
GCGTGCGGCACAGCCCATGGCGTGTGCTGCGGATTGGTCAGCGCGTACAG50.13144058885383808No Hit
CGCGAAGGCCAGCCAACCCTTGAGTTCGTCATCGAGCTTGGTCTCGGCGG50.13144058885383808No Hit
GTGTCGTCGCGGCCCTCGACGACCCGCACGTGCAGGCGATCGTCCACTCG50.13144058885383808No Hit
GTGATATGTTGATTTGCACCGAATCCTGACCCACCCGAGGTAGGTTTTTG40.10515247108307045No Hit
GCGCTTCATGGATTCTGCCGCTTCACGCAGTTCATCCATTGAGGCTTTCA40.10515247108307045No Hit
AGCCGGCACCGTCTGAACGAAAAGAATCCGCTTGTTGACGGTGATGGCGC40.10515247108307045No Hit
TCCCGCAAGCGGGTGCCGAGGCCACCGGCCAGGACGATCGCCTCCATCAA40.10515247108307045No Hit
TGACAAATGCAAACAATTACAACTGAATCAAAAAGAATCGTGGTACTAGT40.10515247108307045No Hit
ATTCTGCAAGGTGATCCAGCGCAGCTCGGTAAATTCCGCAATCGACGCCT40.10515247108307045No Hit
CACGCCAGCACCCTGTCCACACGCGGGGTGGGCCGGCCCACGGCCTGGGC40.10515247108307045No Hit
GATAGCCGCGGGCGTCATACCGATAATGAGTGTGCTCGCCACGGGCGTTG40.10515247108307045No Hit
CTATAGCGCAGAAAAATCCCCTCGGCCCCCTGGCGGCATTTGCAGCCATG40.10515247108307045No Hit
GGTCTGCGCATGCAAGCGGAGTTGGCACAGCGCGAACAATCGCCCGACGA40.10515247108307045No Hit
AAATGATCCGAGCGATGAACAGCGCCAGGCCCAGCCCGATCAACAGCGCA40.10515247108307045No Hit
GGCTCGGAGAAGCCCTGCGACCACCAGATGTCGAGGTTGGCGGTCTTGGG40.10515247108307045No Hit
CGCACCTGCTGCCCGGTGCCCTCATCCGCAACGACCACCGCACGTTCATC40.10515247108307045No Hit
TCCCAATACTTGCTCAGTCAGTGCTGACGTAGTCGGCGACCACCGTCGCT40.10515247108307045No Hit
GAAGTCACGCTACGGCTGATGCTGCCCGACGGCAATCGTCGCGCATGGCA40.10515247108307045No Hit
GTGTATGGCAAAACCATCAGCAAGCGTTATCCGTTCAGCGCCAGCAGCAC40.10515247108307045No Hit
GGGTAATGATAACGGTGCCGATGCCTTTATCGTGCAGCACTTTCGCCGCC40.10515247108307045No Hit
GCCCAAGAGCGACATGCGCACGGCCAAGTTGATCGACGGCGTGGTGTGGG40.10515247108307045No Hit
GAAGGAAGGCTTGACGGTGTTCCGCGATCAGGAATTCTCCGCCGATATGG40.10515247108307045No Hit
AGGTAGAGCAGTTGCATTGGCGACTTCAATCCTGTCATAAGCGGTTCGCG40.10515247108307045No Hit
GGTACTTCGCCTCCGAGAGCTGCTGGCCCTCAGGGGCCTGGAACACGATG40.10515247108307045No Hit
ACATATTACCGGCGATGCCGTCCGCGCAGCGGTGACGTTGTCCCGTCGTT40.10515247108307045No Hit
GCACGTAGTCGTTCTGCGACTGGATGCCCGCCAGCGTCCACTGCTGCTCG40.10515247108307045No Hit
CGGTTGCCAGCCCACACATAAAAACATCCGGAGCCGCTTATGTGGATTCA40.10515247108307045No Hit
GAGCAAGAAGGCCGCCGCGCGCAAGGCGTTCAAGTCCAGCAAGAAGGCGG40.10515247108307045No Hit
CTTCTGGACATTGAACGGGCAGGTGTCCGAGCGCAATGCCGGCCAGCGCT40.10515247108307045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)