FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Tr1_NCI3c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Tr1_NCI3c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6422
Sequences flagged as poor quality0
Sequence length101
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATTGAAGCGGAACGGGTTGTACTCGAACATCGCCTGCTTCGCGCGGGCC120.18685767673621925No Hit
TTTTCCCGGTGTACGTCAAGGGCGCCGGCTTCTCGATGGGCGACCTGCAT80.12457178449081284No Hit
GGATGTCGGGCGCCCGGAAGTCGCCGATCACGTTGCGCGCGATGAGCGCC80.12457178449081284No Hit
GACATGACGCACGCCTGAGGATCATCTTGGGCTCAGGCTGAGGGGCTTGC80.12457178449081284No Hit
TCTTCGTAGCAAGGAAGACGCACAGCATGGCACCCGGCGCCCATCCCCCA70.10900031142946122No Hit
TACAGCGTCTGCGCGCGGCGCGTGTCCAGCGCCGTCGACCAGCCCACCAG70.10900031142946122No Hit
GGTTTGCGCTCGACCGCCTGACGCGGGAAGGCACATTGGAAGAGGCGCCC70.10900031142946122No Hit
CCCGAGCACTGGCTGACCTGCCCCGTCGGCCTGCGCGGCTCCTGTCTCTT70.10900031142946122No Hit
ACCTGCGCACGCACCCGTCGGTAGCACTGGCGCTGGAGCAGGGCCGCATG70.10900031142946122No Hit
GCCCTGCTTCTGGATCAAAAACAGGGCGATCAGTACGATCAGCGCGAGGG70.10900031142946122No Hit
GAAGGAAGCCGGCAAGGATGTGTCGGCCTACGAGCGCGGCCAACTGATGA70.10900031142946122No Hit
GATCAACAGCCAGTGCACCTGCGGCGACGTGCCGGTCGCGACCAGGAAGA70.10900031142946122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)