FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Bi082c_2_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Bi082c_2_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3692
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTTAAGAATGATGGTCATACAGATCCGGGGACGTTAGTCAAAGCGCTCA70.18959913326110509No Hit
CCTCATGGCCCAGTTGCAATTCGCCGACACTCAGCTCGGTCACGTTCGAA70.18959913326110509No Hit
CCCTGAAATACATCGGTGGCCGGGTTTCGCGCCACGGCGCAGAAAAATCG60.16251354279523295No Hit
TTCGTAGACATAACGCCCGTAACCGGCTTGCGCCACTGTCGTAATCCGTT60.16251354279523295No Hit
GGCGTCCACCGCGTCCAGCGCGTGCCCGTCACCGAATCGGGCGGGCGCAT50.13542795232936078No Hit
AGGTAGAACTTCGAACTGAAGATCCGCGTGAAGTTGTCCACGCCCCAGCC50.13542795232936078No Hit
CGCCTGATGTGAGGATTGTGACGCTGACGGGCAGATCGCCGGACTCCGGA50.13542795232936078No Hit
TCCCACATCAGCCCGAGCGGACTTCATGGCGTTGCCGACCTTACGGATCA50.13542795232936078No Hit
GTCTTGCTCAGCGTTGTTTTCGACGACGGCCGGCAGATCCACTTTCGCCA50.13542795232936078No Hit
CAGCTGGTTCATGCGCTCGATCACCTGACGGGTGATGTCGTATTGAGGCT50.13542795232936078No Hit
ACGTTTTGACAACGGCTGGGAAGCGCACATCAACGGCATGCATGCGGAAA50.13542795232936078No Hit
TTATAAAGATTACGCTGTCTGGCAGTTAAGTGAAGAAGAGACGGAGAAAC40.10834236186348861No Hit
GCTAGAATGGCCGCCTTGCCGTTGCCGAGCCTGCCATGAAACCTGTAATG40.10834236186348861No Hit
GCTCTTTGAATTCCTGCGGAACCCCGTGTGGGATTTATTTAGGTTACTGA40.10834236186348861No Hit
GCATTCTTCCACTCGTAGCGGTGCAGTTTGCCCCACTGCCAGGCTCTGCG40.10834236186348861No Hit
GAATATCACCGGCGTTACCCACAGGTCAGCCTGGAACTGGTGACCGGAGC40.10834236186348861No Hit
TCATAAAGGCTTTTGGCGCGACGTAGAAACCGCCCTCGCCCTGCACCGGC40.10834236186348861No Hit
GGTATCGGTATCCCGTTGGGCGACCGCAACACCGTCGAGTCGGGCCTGTA40.10834236186348861No Hit
GTTAAGGATGATCATGTCCACTTTGGCCGCAATAAAGTTGTCTATCTGCG40.10834236186348861No Hit
GAATAGGAATGTCCAGCCATCACGTTCTTTTTTCATAAAGAATAGCGCCG40.10834236186348861No Hit
CCCTTTAATGATCTGGCGCGTGCGGAAGCCGGTCTTACACCCACTTTTTA40.10834236186348861No Hit
GTTTTCCACTGGAGAATCCCATGGCGCTTGACCGCTCCGACGTGGAAAAA40.10834236186348861No Hit
GGCCGGTATCGCCACCACGTCGCTGAAGTACGCCAATCACTTCAAGCGCC40.10834236186348861No Hit
TTTTTCATCCTCATGCAGATAATTGTTTGTGTCTATCTAGGGGCGCCAGA40.10834236186348861No Hit
GGTCAAAGAGCGCATTGCTCAGGAAGACTGCCGTAACGGTTTCCTGTTGG40.10834236186348861No Hit
GACCATGGCAAAGCCAAGGAAAGTCAGCATAGGAATACTCCAGGCGTAGC40.10834236186348861No Hit
ATATCAACCAGCGTGAATCGTCCGTCCTGTTCCAGCGCAAAAGTTGGAAA40.10834236186348861No Hit
CACCTAACTGGTGCAACACCACAAAACTCCAAACGCCAAACCATCCCCCA40.10834236186348861No Hit
TCGTCGAACAGTCGGTTGAGCAGGTTGCCGGCGATGGGCGAGTCACCCAA40.10834236186348861No Hit
CTCGTATGCCACACCATCACGCATCCGTATTATGAAAGAAGACATTCTTT40.10834236186348861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)