FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_Bi061a_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_Bi061a_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4759
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCAAAAAATGTAGTGCTTATTCCATGTTGAGGCAGTTCGTGACGGTTCA80.16810254255095608No Hit
CAACTGCGCCGCCTTGGACGCGACATAACCGCTGGTGTTGCCCTGCCCCG80.16810254255095608No Hit
GCGCATCAACAGCCCGGGCGGCAGTCCTGTGCAATCGGGCTATGTGTATG70.14708972473208656No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.12607690691321705No Hit
GGCAATGGTCGAAAAACACATCGAGGACGATGCCCGCGTAACGGCGGCGG60.12607690691321705No Hit
GCCGTGGATTAAACGGTCATCGATACGGGCAAGGCCGATCACCATGTAAT60.12607690691321705No Hit
CTTCACGATGGCTGTAGTTAGTGTCCCACTTGTTCCCCTGCACGTTTCCG50.10506408909434756No Hit
ATCCAGGCCATCATTGGTAACGCGCGCGCTTATCTGGCGATGGAGCAAAA50.10506408909434756No Hit
CTTCAAATGCCTGCTCAATCATATTCACGACAATTTGATGTTCAATCAAA50.10506408909434756No Hit
CCTGCGCGCTGGCCTGGCCGGCAAACACCTTCGCAAGCTCATCCTCCGCA50.10506408909434756No Hit
TCTGCATCGTACCAAGGGTCTTACCGGCTGTTGCCTTTTCGGTCTGTGCA50.10506408909434756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)