FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_198c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_198c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5358
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAAAAGTAAAACAAATTGAAAAAACGGATGGAGGCTATGGTTTGCAA80.14930944382232175No Hit
TCGCAAATATTTGTCAGAAAACGCCCAATTGCTGTTTCTCTTGCAGATGG70.13064576334453154No Hit
CTATTTCATCGGTGGCGCCTTGGGGTCACTGTTGGGCACGCAACTGTTCC70.13064576334453154No Hit
CTGTTACAGGCGCATCCCGCGCTGCGCCTCAGCCTCTATGAGTTCATCAT70.13064576334453154No Hit
ATAAAGGGTGTAAACAAGGGGGGAAACCAATGTTTGATAAAATAAGTGCC70.13064576334453154No Hit
GTCTTGCATCTTGTAACAGGCTCCACAGGCAGCTTCGTAGACGATGAAGG60.11198208286674133No Hit
GTTATGTTATTAGGCATAGGAATCTTCTTTACGGTGAGAATGAAATTCAT60.11198208286674133No Hit
ACGCCATTGATTGAAAAAGAAGTCAATCCTCACTTTGAACATTTTCTATT60.11198208286674133No Hit
TGTTGATCCATTAAAGGAAATGGTTGACCTCATCAGCAGCTCAAGGTCAT60.11198208286674133No Hit
GCAGCAGGTGCTGCACCTGCTGCTGACCCTCAACCAGGAAAGAGGCACGA60.11198208286674133No Hit
GGATGATCCTGGCTGACGAGCTGGCAATGCAATTTCAGCAAGACCTGCAC60.11198208286674133No Hit
GGTCTGTCTGCGGTTGATTCGTGAAACAGATCGCTTCTCCAGAACAGACC60.11198208286674133No Hit
GTATAACCGGCCTCAATGGCAAAACCGCCCGGTGGAGGGGCTTCATTGGG60.11198208286674133No Hit
TTTTCGGTGTCACACTCCCGCTGGGACGGCCATTTCTCACCGCTTGTCTT60.11198208286674133No Hit
CTATTGTAGCGACAATAACAGCTCATTATGAAGCAATGCATCATTATGTA60.11198208286674133No Hit
ACGTGTATCCGCCCCAGCCGCCTCTTTTTTCGCAAACTCTAAATTCATCA60.11198208286674133No Hit
TCACCATAGTGTAGAAGAAACGATTGAAAAGTATCACTTATCAAGACAGT60.11198208286674133No Hit
TTTCAAGAGAGTATGGAAACGATCAAACATTTAGCAGAAATGAATGTCCC60.11198208286674133No Hit
GGTGTACGGCACGTTCGGCAGCGGCTTCCAGGCGTGCATTGCCATAGCGC60.11198208286674133No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60.11198208286674133No Hit
TATATATAGTTTTAAATGTTGGCTATTTTTAAGTTGTTCCCATTCACCTG60.11198208286674133No Hit
GTATAGCAGGTGAGCTGATAGTCTCCCTTTGGAATAGGGAAAGACAGTAC60.11198208286674133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)