FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n02_044b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n02_044b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6567
Sequences flagged as poor quality0
Sequence length101
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGCGTCAGTGTCGAGCCGCACTGGCAGACCCTCGACCATGAACTGGTG80.12182122734886554No Hit
CTACACGCCCATGGGCCGTCACCACGGCAGGGCGGGCGCCGTGGATGATT80.12182122734886554No Hit
TGTCTATAGTCTTGCAAACACTTCTTTTAGCGCGGAGCAGGCCTCGGCAT80.12182122734886554No Hit
GGTTCCAATGCTGCCAATTGTGCCTGGGCCTCGGCATTGCGCAGGCTCGG80.12182122734886554No Hit
CCCCAGGCCAATGCCCGGGACATGGACTCCTTTGGGCGGTCGTCGAACGC70.10659357393025734No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG70.10659357393025734No Hit
GCCCCCAGCGGCGCAGCAGCCAGCGCATGCCCCACACCACCGGAGGCACT70.10659357393025734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)