FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_negcon03_CC_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_negcon03_CC_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2794
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACACGTCCTGCGTGAGGTCCTCGGCGTCGTGCCGGTTGCCGGTCAGGC70.25053686471009307No Hit
GGGCGTGGTGGTGGTCGTGCAATCGCTGTCGCGCAAGGGCGTAATCGATC70.25053686471009307No Hit
GGTTCCAGGTGCGCAACGTGTACACCTGCTGTTTGGCTGCACGGCTGGTG60.21474588403722264No Hit
CCGTAATGATAATGGCCGTGCTTTTGCTCTTCTTTGGTGAGATAGCTGAT60.21474588403722264No Hit
CATCAAGCCTGGCTCCGAACTGATACCTGCCGACAGCGTGATCCAGGACG50.17895490336435219No Hit
CGTGGAGCGTGTCGAGGAGATCAACTGCCACCACAACTACACGACCCAGG50.17895490336435219No Hit
AGGTCGACCTGGTAGTACTCGGTGAGCCAGTGGGCGCGCGGGTGCAGGTC50.17895490336435219No Hit
TTGTTCATCAGCTCTTCGTTGGCTTCAGCGGCAGCTTCAACCATGTTGTT50.17895490336435219No Hit
GATTAGGGTTTCTGAAGTATCGGGATCGGGATGCGAAATCTGGACATCGA50.17895490336435219No Hit
GTGCTGCACAAGCGCTTGAAGCCAAGGGCGAGGCATTTGCCGCAGCGATG50.17895490336435219No Hit
GTGCTGCTGGGTGCCGGCGTCGTGTGGTTCGTCGGGTGGCGCGACTCCTT50.17895490336435219No Hit
GGATTGGCCAGTTGCTCAAGCCTTCCCTCCCGTACTCGCGCAAATGGGGG50.17895490336435219No Hit
ATTGTGAATCGAGCGGCAGACGCTCGAACTCGCCATCGTTGCGGCGCACG50.17895490336435219No Hit
CGGGACAGCTCGATCAGCAACCGCCAGAAATCATCCCGGGCGGCCGGGTC50.17895490336435219No Hit
ACCCAGGTCTTGTAGAAATCGAATGGGCAGGCGGCCACGCCTTCCGGTGT40.14316392269148173No Hit
GTCCTTGCCCGACTCGGTGTTCGACGTCATGAGGGCGACCTTGCCGCCCT40.14316392269148173No Hit
CAAGCACCTCGAGCACATCTTCGAGAAGCTTGGTGTGGAAACGCGCGCCG40.14316392269148173No Hit
GTGCGCGACGATGTGCTCGGCGTCGTCCTTCCAGGCGAGCAGTTGGCGAA40.14316392269148173No Hit
TCACATGGGGGCTGGTCATCACGCGCGGGCCGCACAAGAAGCGGCAAAAC40.14316392269148173No Hit
CATCACATGTCATCGCCGCATCCGGAAGGGCTGGGCGCACGCGCTGCCAT40.14316392269148173No Hit
GCTCAGCAGGCGGTCCAGCGGGTTCTTCACAAAGTCCGGGTCGCCCAGGT40.14316392269148173No Hit
GTGATGGTCGACACCAGGGACGAGTCCTTGAGCATCATCACCAGGGTGTT40.14316392269148173No Hit
GTACGTCTTCATCGCCTTCCAGCTGATGTTCGCGATCATCACGGTCGCCC40.14316392269148173No Hit
GGCTGTACTGGCGCTGCTGTTGCGCACCCGGCGCCAGCTCCACTTGCACC40.14316392269148173No Hit
GCTGTAGCAGAAGCGGGTGTTATTGGTAAGCCTGACCCTGTGCGCGGGGA40.14316392269148173No Hit
CTCCGCCAGCCATTCGGGATACTGACCCAGTAGCTGAATGCGCACCAGCG40.14316392269148173No Hit
CCGCATGACCAACCGCGATTGGGCGTTCTCGATCGAGGCGATGCGCCAGT40.14316392269148173No Hit
AAGTTAGGCTGCACGAAACTGGCGAGAATGATCAGCAGGTACAGAACCGG40.14316392269148173No Hit
GATCGGTGTCGACCCACGACCGCTCGACCCAGCGCAGGTGGTTGAGCAGG40.14316392269148173No Hit
GGTCAATCGGGCTACCGCGATCCACGGAGCTGTCAAAGGTGGTGCCGTTG40.14316392269148173No Hit
GATCCGCGCTACGACGCTTCGCGTGAAATCCGCGCCCCGCGCGGCACCGA40.14316392269148173No Hit
ATCTCACGGTGTTTGCAGCCACTCGCCTGGTGCCGCTGCTGAGCCCGGGG40.14316392269148173No Hit
CGGCATGACTGTGTGGGACGTGGCCGACGAGCAACTGCCACGCCTGGGCG30.10737294201861132No Hit
CCTTTTATCCGTTGAGCGACGCCGCTTCCACTTGCCAGCGCCGGATCACT30.10737294201861132No Hit
CATCACGCGCATCTGCAGCGGCGGCACGACCGCGAACGTGGCAATGCCCC30.10737294201861132No Hit
CTTTTAGGACATGCTCAATTTTCTGCTCCGTATAAGCCCGAAGTGAGGCC30.10737294201861132No Hit
CTAATCAACTGCAGGCTGAGGCCTACGGCCAGCACCAGCACCAGTGCATT30.10737294201861132No Hit
GAACACCGGCGCGATCGACCTGATGTGGCCCGGCCAGCGCGGCGACACCA30.10737294201861132No Hit
CTCCAACGCCAAATCGTTCCTCTACAGCATGCAGACCTCCGGCTCGGGGG30.10737294201861132No Hit
ATGCTGCACACCGTGAAGTGCAAGCGCTGCACCGGCCATTTCGTGGCCCA30.10737294201861132No Hit
ACTACGTGAAGTTCGTGCCGGGCTCGAACGACAACGGCATCGTCGAATTC30.10737294201861132No Hit
GATCAATCCTGCGCGACGCGCACCACCAACTTGCCGAAGTTGCGCCCTTC30.10737294201861132No Hit
GCCAATCTGCGTACCATTCACACATCGACGCAGTAATTTGGATAGGAGAT30.10737294201861132No Hit
CCTCGGTCACCGGTTTGTCGCCATCGGCCAGTAACTCGCAGGATTTGCTG30.10737294201861132No Hit
CAAATGGCATTGGCCAACATTCCACTCTCGCATTTTCTGAGCGAAGCGCT30.10737294201861132No Hit
CCGTTGTAGCTGTATTCCTCGTCATCGCCATCGGCATCGGTGAAGTCCTG30.10737294201861132No Hit
CTATTGATTCTGGATGTTCAAGTTGGGTTGGTGCATGGCCAGGAAAAGCC30.10737294201861132No Hit
GTGCCCGGCCTCGTGGAATGATCGACACCTTGTAGACCGGGTCGTGCTCA30.10737294201861132No Hit
TCTGCGCAGGCATCGCGCTCGCGCTGCGCATGCAGTTCGTAGAAGAACTT30.10737294201861132No Hit
GTCACCACCCTGTGGGCCAACCCCAAGGAAATGCAGGCTTCGCGCGATCG30.10737294201861132No Hit
GCACGGGCGCTCGCAGCGGCGGATGATGTGGGAGGGGGAGTGGGGCATGA30.10737294201861132No Hit
CCCTTATTTTGTCTGATTTCTGATAAAATCAGCGCCCTGCACCGGATAGC30.10737294201861132No Hit
CGGCCACCCGGTCAACGTCAGCCCCAAGACGTACTACGGCTACACCGACG30.10737294201861132No Hit
GGGTAGAAGACATGGGCGTAGTGGGTCGCGCCCTTCTCGATCGCCCAGTC30.10737294201861132No Hit
TGGTGATGTCGCTGTTCTCCTGGACGTACATCTTCCGCAAAGCCTTTGCC30.10737294201861132No Hit
GCGTCCGAGATCTAGACAGTGGAGGACCAGCAGACACACACTCGAGGTCT30.10737294201861132No Hit
AGGAGAAGCTGCGCGAGATGTCAGCCCTCATCCACGACGAGAGCGAGCGC30.10737294201861132No Hit
CGACTGTTGTCAGGGGGGTGAGCACAACGTATGGCATTTTGGGCCCTCGC30.10737294201861132No Hit
GTCAAGGTTGCTCCTTTTCTGCCTTTAAAATATGGTTTCTTTAATCAAAA30.10737294201861132No Hit
CCTTATCAATATTTAAGCGATCCCATACAACAGACATCGGAATCGGCATT30.10737294201861132No Hit
TTACCGTATACCGTAGATGATTGGCGATCTGCCTGCAATCGCTCCGCTTG30.10737294201861132No Hit
GAATTGCATCGGGCGTTGCGGTTTGATGCCTGAAATGCAAAAAGCCCCAC30.10737294201861132No Hit
GTCCCGTCGAGCGCGCGCAGAGCCAGGCCAGCAGGGCCGTGCGTAGGTTG30.10737294201861132No Hit
CCTTTGCGGCCACGGCTGGCAAGAAACCGGGAAGCGAAACGCTCGTCATC30.10737294201861132No Hit
GGGTGGTCCGCGTTTCATCTGGCAACTGGGCGTGCTGGTGCTGGTGCTCG30.10737294201861132No Hit
CGTGGGGTTGTTGGGGTTGATGACGACGATGACCTTGGTGCGGTCGGTGA30.10737294201861132No Hit
ATTAAAAGGTTTACAATAGATGAAAGTATGGGCTTTGCCTATGTTGATTT30.10737294201861132No Hit
GTTCTGGTTCGGTCGAGGCGCTCGAGGACGCACTGGCGCAGATCGACGTC30.10737294201861132No Hit
CTCGGTGACGGTCGTTTCCTCGCGCTTCTGCTGAGTGCGCCGATCGAGGT30.10737294201861132No Hit
GGCTGGAACCGCACGATGGACCTCGTCGCCGAGCAGGGCAAGCAGGCCTA30.10737294201861132No Hit
ATCCATACCCAGGCCGGCACGCCCGGAAACCAGTACGCCATGTACACCGC30.10737294201861132No Hit
ATATTTTTCAAAGACTTAGCGCCCATGTTTCATGATGCGGAAAGATTTTT30.10737294201861132No Hit
GGGCTTGACCGCCAGGACGTGGTGCAGCTCGATCTCGTTGCGCTCGAAGG30.10737294201861132No Hit
GACTTGATTGATCAATATAATAACAACATTTCAAATAACGCTAACACGTT30.10737294201861132No Hit
AGGCCGACCGAGCCCATGGTGTGCACCACGCCCATCACAGCGGCCACGAT30.10737294201861132No Hit
GATAAAAGAGCCCGACTCATGCTTACATGTTCATTTTTCACATAACGTCC30.10737294201861132No Hit
CTGCTCCATAGCGCCCTGCACGAGGGACTCGGTACGGGTGTCGACCGAGC30.10737294201861132No Hit
AATTTATTGGCACCAATCGACTGCGCCGCAAAAATAGAAACCGCAATTCC30.10737294201861132No Hit
CATTTCTCCCTGCAGCCCCAGCCAGATGCCCACAAACGCCCCCTTCTGTC30.10737294201861132No Hit
TCACTCGGCGGAGTTCGAGCAGCACGTCCACGAGCCCATCGCCCGTCAGC30.10737294201861132No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)