FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Tr3_C12I2c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Tr3_C12I2c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3180
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTGTGTGAAGAGCGCTTGGTGCTGATCTGTGAAGCGGACCATGCGCCA80.25157232704402516No Hit
TAATGATACTATGCGCGTTCTGCACTGCCGTGCAGCATCGGAAGCGAGTA70.22012578616352202No Hit
TCAATATTCCATCGCCGAAAAATGGCGGATCGCGACCTTTATCGACCAGG70.22012578616352202No Hit
GTTTGTGTTGATGCTGCTGGCGACCGGTGCCGCCTGGGTGTGGCACAACC60.18867924528301888No Hit
GCGTCACCCTCGGCCTGTTGACGGACCTCGCCCAAGGCAAGGTCAACAGC60.18867924528301888No Hit
CAACAACAAGGTCGCACCTTCTTCCAGGGTGTCTCGGACCTGACGATCCA50.15723270440251574No Hit
GCACGCGCTTGTGCAGTTCCTGCAAACGCCCGAGCTTGCTGGCGTAGCTG50.15723270440251574No Hit
TGGGGGAGCGAACGCTCCCCCATGGTGCATCAGGTGTACTTGCGCTGGTC50.15723270440251574No Hit
GTAGAAAAACTGGATCTGTACATCACCGTTAAAGGTGGTGGTATCTCCGG50.15723270440251574No Hit
TCCTAGTTCAACGCCATTGTTATAAACGATGACCGTTTCGCCCGCAGGGC50.15723270440251574No Hit
GGCCTATGCCGAGGCGGGCATCCACGATCCGAAGCAGAGCATCGACATCA50.15723270440251574No Hit
ATAGTGGGACATGTTCGATAACATATTGAGCCGTCTAGACGGCATATTTA50.15723270440251574No Hit
CCATGGGGCATTACACCGCCAGCGTGGCCGTGCACAGCGAACTGCGCTTG50.15723270440251574No Hit
ACATGGCTTCGCCCGCCCATTGGATGCGTGCCTTCATCGCCCAGACTCCA50.15723270440251574No Hit
ACAATATGTCGATAGCGCTGAGAAGAACCTTCACAGGCAATCTTCAGGCA50.15723270440251574No Hit
GTTCTTCACGAACTTCGCGCACTGCCGGGGCGGCTTCTTCTACAGCCGGC40.12578616352201258No Hit
CCATCTATGAGAACCTTCAATGAGTCACTACAGCTTTAACCCGGCGCCGA40.12578616352201258No Hit
CGCTATACACGCCTGACAAACCAACCTAAAGCACTAACCGCTGAGGGAAA40.12578616352201258No Hit
GTGGTGCGGCGGCGGCGCTGCCGTGGGATGTGAGTGAATTCGTGGGTATC40.12578616352201258No Hit
GCATTATTTTCATGTTGTTTGTCTGAATGCGGACTTAATGGAATGATTCA40.12578616352201258No Hit
ACCATACTCCAGCGTGCCCAGCAGCGGTTTAATCAGGCGATCGCCCGCGC40.12578616352201258No Hit
GTCGACGATGGCGCCGGACTCGATCACCACATGGGGGCCGTCCTCGATCA40.12578616352201258No Hit
GGAAGTACGTTTATGTCAAAAGTAAAAGACAAAGCTATCGTGTCACTGGC40.12578616352201258No Hit
GTCGATTCCATTGGCCGCAGTCAGGCGTTCCAGCTTGAGGGTCACGCGCC40.12578616352201258No Hit
GCGAAGGCGCCGAACGCCTGATCTCCTATGGTGTTTCCAGCTATGGCTAC40.12578616352201258No Hit
AAACAGATACGGAATGACCCAGCCAAAACGATAGTAGTTGCGGATCAGGC40.12578616352201258No Hit
AATCTGATGGACCCACTGCCGCTGTATATCGTGCTGTTGCTTGGGCTGCC40.12578616352201258No Hit
ATTACCCACGCCGTGCTCTGTTTGTGTTTCAGCCCCAGCGCCATTCCCAC40.12578616352201258No Hit
GCCCGGGAAGGTGTAGTCGCTGCTCAGAGCCGTCTGGGTCAATTGATGTG40.12578616352201258No Hit
AAAAAAAACCTCCTGAAGGGAGGCTCTTTTATGCGGGCGGGATTTTAGCG40.12578616352201258No Hit
ATACACCTCTTTACCGTACAGGCGTCGGGTTTCGGCATAGGTCAGCGTCA40.12578616352201258No Hit
ACTGAGCACTTAATAGACTAGTCTCAACAACACGCTTTCCATAAAGGAGC40.12578616352201258No Hit
GGTGTAGACCGCGAAGTTAGCCTGAGAGCCAGAGTGCGGCTGTACGTTAG40.12578616352201258No Hit
GGGTGACCCCGATTTGCTCACATTCCGCGCGCTGCGCCTGATGCAGCAGG40.12578616352201258No Hit
GGTAAAGACCGATGATGCCCAGGGGCAGGGCCAGGAAGAACGGCAGGCGC40.12578616352201258No Hit
GCACACCAGACCGTCGAGGCCGGCTTTCTGCGCCAGGGCCGCCAGGCGCA40.12578616352201258No Hit
GCTCCTAGTACGAGAGGACCGGAGTGGACGCATCACTGGTGTTCGGGTTG40.12578616352201258No Hit
ATTTACTCAGTATCTTCGCTACTGGGTATTTGTCGCTCCAGAATGAGATC40.12578616352201258No Hit
GGTGGACAGGATACTCAGCTCATACCGCAACAGAGGCTGGCAACCGTTAG40.12578616352201258No Hit
CACCGGCTGTATCCCGTTCTACAAACACTTCCAGACCGCGGTAAAATCCT40.12578616352201258No Hit
ACCCCCCATAGATGCAGGCAAGCAGAATAGGGGGATAAAAGGGATTAGGC40.12578616352201258No Hit
GAGCTGATGGCACAGCTGGGCGTGAAACGCCTGGTGGATCTGATTGGCCG40.12578616352201258No Hit
ACTTAAGAGAACACGTAGAGGATCTGGTCGCTAACCGGCTGGATATGAGC40.12578616352201258No Hit
TATCCAGGGAGCCTATGCCAGGGTGGAAACGGCGGATATCGGCCTGGCCA40.12578616352201258No Hit
GTTTTTTACGCTTTTTCTCGATCAAGCGCTGCTGGATGATAGGCACCATC40.12578616352201258No Hit
CTATGAAATCACCGAGAACAAGAGCAACCGCCCTGTGGCATCGGTGAAGT40.12578616352201258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)