FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Tr2_NCI3b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Tr2_NCI3b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4384
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAATTGCCTGTGAAATAGAGAAAAACAGGCAATTCACTTTCTTTCGA70.15967153284671534No Hit
TTCCCTATATCGCCTTGCAACTGAAAGCCGTGTCCAACTCGGTCGCCGCC60.13686131386861314No Hit
CCTGGACCCGAAGCAGGTGCAACTGGTGAAGCTGCCTGGCGGCCATCACT60.13686131386861314No Hit
GCACGGCGCAGCATCCAGTACAAGCCGCCCGCCAGCAGAGCGCCGAGCGC60.13686131386861314No Hit
GCCTTGGTGGTGGCCACCTTGACCATGCGCCAGTTCTTCAGGATGTACTC60.13686131386861314No Hit
GCTGGTTGACCCCGAGTTTGTACAGGCCCAGCAACTGCACCAGCATGCCG60.13686131386861314No Hit
CCAATGTGCAGGACATCTATGCGCTGGCGCCGTTGCAGGCGGGGATTGTG50.11405109489051093No Hit
GCCCCGTACTTCTCCACCGAGGCGCGGATGGCGTCCATGAGCTCGGCGGC50.11405109489051093No Hit
GGCAAGAAGCAGGTCCTCGTCGGACTTGTCGAGGCCGAGCTCGGCGGCCC50.11405109489051093No Hit
GACGTTGTTGTGCAGGATGGTCGGCCGGCCGAGCTCCCGGGCCGCTGCCG50.11405109489051093No Hit
CTTGAGTGACAGTCCAGAGAAATGAAACCCTTTTTGATCTTTCGGGACGG50.11405109489051093No Hit
GCTCAGGCGATGACGACGCAATGAACGGCGCATGCGATGCCGCTGCCACG50.11405109489051093No Hit
AGCAAAGGCTCGACGAAGGACAGGACATCCTCCGCCACCTTTCCTTCCGG50.11405109489051093No Hit
TAATAAAATTACAGCAATTTCAGTTGGTGCCGTCCTCATCGTCATTTTAG50.11405109489051093No Hit
CGTGAACGGTGTTGTGCGCTTGAAGCTGTACAAGGGCAATGTGATCGTCA50.11405109489051093No Hit
GACCGGGCCCACTTCGATGCACTGCGCACCCAGCGGTGCGATGAAGCGCG50.11405109489051093No Hit
AGCTTGATCAGGGTGGTCTTGCCGCAGCCGTTTTCACCGACGATGAACAC50.11405109489051093No Hit
GCATGACGCAGTGACAGAGGCCTTTGGCTATTACTTTAACCGTGATGGTG50.11405109489051093No Hit
GTTGCCATCCGGCGGCGACGAGCTCGCGCTGACGGCCAATCGCGATGTCG50.11405109489051093No Hit
CCACAATGGTGAACAACAAGGTGCCCAACATCAGCAGGGGGAAGGATTCG50.11405109489051093No Hit
CCATCAGCACTAATGAATTGAAAGAAGTTGGAGGTCGCTTATTCGAAGGC50.11405109489051093No Hit
GCTCAACGAAGTGCTGCGTGCGGAAGCCAAGACCAATCATCTGGTGGCGC50.11405109489051093No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)