FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Tr2_NCI1b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Tr2_NCI1b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3804
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACGACTGGACCAACGTGCGTGCGCTCGGCTCGCACATCAAGGGCAC80.2103049421661409No Hit
CGACCCGGCTAACCTGTTTGTGGCAAGCTTTATCGGTTCACCACCGATGA70.18401682439537329No Hit
CCCGCAATGGCTGCGCAGGCCGCGCCCAGCATGCACCTGGTGATGGTGCC60.15772870662460567No Hit
CCCCCTATCTGGTGGACCGCATCCAGCAACAAGCCAAGGCCGGCGCGCGC60.15772870662460567No Hit
GTACCGGCAGTTCTTCATCGCTGACTTGCGGGGCATCGGCGCGGCAGGCT60.15772870662460567No Hit
CAATTTCTGGATGGCCTACGCCAATTTCGAGCGATTCGCGGGGATCGGCC60.15772870662460567No Hit
GCCGTTGACCGCGTCGGTCGAGCTGCTGCTAAGCCGTCCGGCTGCGACAT60.15772870662460567No Hit
GCATCAACAGGTCGCCGAGCTCCTCGCGCAGGTGCTCGGAGTCACCGGCC50.13144058885383808No Hit
GAAATAGGTACGCGCAATCATTCCGCGAATCGATGGGCGCGGCATGACCT50.13144058885383808No Hit
GATCAACAACGGTAATGCGCTCTCCCTGCCGTTTGCCAAAGGCTTCGGTT50.13144058885383808No Hit
CCGCATGCTTGGACGCGGCATATATGCTCATCTTCGGCGCCGCCCCCAGG50.13144058885383808No Hit
TTCCATATCCGCGTAGGTCTGGACAGAACACTTCATGTTGATCAGAGAGC50.13144058885383808No Hit
GTTTGCTGGTGGGTCGCGCCGCTCGGGTTGTCCGCGTCCGCAACAGTAGC50.13144058885383808No Hit
CATCACGCCAGCACTCCCTGCATCTTCTCCAGCGTGTGCTCGCGGCTTTC50.13144058885383808No Hit
CGTCGGGCAGGACGCCCACGACCTGCGCATGCTGCTGTGGGGCGTCCCGT50.13144058885383808No Hit
CCGTGGATCGTCCTGCATCCGGGTGCGACCGCAGCGTCGCGGCGCTATCC50.13144058885383808No Hit
CGACTTCCGCGCCTTTTTCGTACACCGTGACGGTGTAGAAGTTGTTGATT50.13144058885383808No Hit
TACTTCGAAGCTGCGTCCCACCACGCTGCATTGATCAAATCCCTGCCGGT50.13144058885383808No Hit
GTCCACCGTCGGCTGCGTCATCCCCGCCTACAACGAGGAGGACGCGATCG50.13144058885383808No Hit
GCGTCGAGGCGCTGGCCGGCATCCCCGGCTCGACGGGTGCCACGCCGATC50.13144058885383808No Hit
GCCCAGGTGACTGGCGCCACGGGCCTGCCAGTCGGCAGCCCATTGCAGGT50.13144058885383808No Hit
ATCCTGGAGACGATCGGCATGGACGACGAGACGCTGCGCGTCGGCGGGGA50.13144058885383808No Hit
GAACAGCAGCACCAGCAGGTTTTCCACCGGGATCCGCGAGCAGGCCAGCA50.13144058885383808No Hit
GTTTTAGTGAGCTGCTGCTGGTCTTTGTGATTGGCCTGATAGTGTTAGGA50.13144058885383808No Hit
ACGAGGAATCGTTCGGCCCCGTGGTGACGGTGGCGCGCGTGGATGGCGAT40.10515247108307045No Hit
GATACATACACGGAACAAACTTATATAAATCCTGTGGAATTAAAAAAGAA40.10515247108307045No Hit
GCCCGAAATCGTGACCGGCGGCCCAGGCTCCTCAAAACCGAGGTCGATCT40.10515247108307045No Hit
ACTGGGAGCAGATGGAGCGCTTGGCGCACGGCTGGCTCACGGCCAAACGG40.10515247108307045No Hit
GCCACCTATGAACACCTGTTGTCCAACGACACGGATCGCCAGTTGTTCAA40.10515247108307045No Hit
CGAAAGACCCACTACCGGTATAACGCCCAGGGCCAGGTCGATTGCATCAC40.10515247108307045No Hit
GTGGAGTCCGGTACGGTGAAGGACGAAACCTGGTATCGGGTACTGGTCGG40.10515247108307045No Hit
GTTCGTGGCGAACCAGGATGTGGGTAACAGCCGGTTCCTTGAACAGCGCG40.10515247108307045No Hit
CTCAAAGGGTGATGCCTCGCGCAGGCGTTCTATCGATGCCTGGGCCGTCG40.10515247108307045No Hit
GGCATCTTTCGAACGTACGAACGCGACGAAGGCCGCGAGATGCACTACCG40.10515247108307045No Hit
GGTGAGAATGTCATCGGTATTCATGCGGGGGCTAACGCCGCGCTGACCAC40.10515247108307045No Hit
GTCCAAGGACCAGATCGTCCGCTCGATGCAGGCCATGAACGCCGCCGGCA40.10515247108307045No Hit
CAGCTGTGGCGCGCGCACTTCCTGGAGGGTGCAGACGTCGGCGACGCGTT40.10515247108307045No Hit
GAACACACATGGCCTGGTACCTCTACCGCCTCGGACGCTGGTCGTTCCGG40.10515247108307045No Hit
AGGGTGTACGGCTCTAGTTTGAACTGCACGGTCGGCTCGGCCGGGTTGAT40.10515247108307045No Hit
ATTTCTCCTATTGTGACGTGAGCCGGTTTTCACTGGGTCATTACACAGAT40.10515247108307045No Hit
CGCCAGGACGGCCAGCGCTGCCGCCGTCTTCCAGAGCACGCGCCACAGCT40.10515247108307045No Hit
GCTGACTGAGCGCCTGGGTCCGTTGTTCAATCTGCGGCAGACGACTGGCA40.10515247108307045No Hit
CGGCAATGCGGGGATGGCCGTGGCAATGCCCTGCCACGCCAGCACAAAAA40.10515247108307045No Hit
GTGTTCATCGGCTATTCGACCTCCGGCAAATCGCTGAACATCCTGACGGC40.10515247108307045No Hit
GGCCATGCGACATGGCCCGGATGAGACCGCACGCAACGATCCCGCCCGTC40.10515247108307045No Hit
TCGTATGGCCGGACGGCAGGCTGACAAGCTGATGATCCACCAGGACGCGC40.10515247108307045No Hit
GCCCCACGACGTTGCCGCGCTCGTTGGTGATGCCCGCGATGTCGCGCAGC40.10515247108307045No Hit
ATATCGTTGTGCTCGAAATGGTGCTCTGGAAGACGCGCGGGCCCAAGGTC40.10515247108307045No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)