FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Tr1_NCI3c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Tr1_NCI3c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6422
Sequences flagged as poor quality0
Sequence length101
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTTCATCCACTCCGGCGATCAGATCTACGCCGACGGCCCGATCCAGGC120.18685767673621925No Hit
TCACGCACGATTACGCGCCACATCCTGCCATCGACCGCATGCTGACGGGC80.12457178449081284No Hit
GTGTCGATGCGTTGTGGACCGAAGGCCGCCGTGTGCGGGGTCTCAAACTG80.12457178449081284No Hit
GGCCTTCAGGCACGCTTGCCGATAGGCGACGGTGGCATCCAGATAGTAGT80.12457178449081284No Hit
GGTTCAGGCGCAGCCCAACCTCCTGCATCCGGTCGACCGGGCTTTGGCCG70.10900031142946122No Hit
CGACGCTCCTTCATCTACTCGCTGGCCAAGTTCCGCATCGAGTCCGAGAA70.10900031142946122No Hit
GAGCCGCGCAGGCCGACGGGGCAGGTCAGCCAGTGCTCGGGCTGTCTCTT70.10900031142946122No Hit
TCACCATGCCGGGCGTGCAGAAGCCGCATTGCAGGCCGTGGCATTGGCGA70.10900031142946122No Hit
GGAGCCGTTCTATCCCGACCGCATGGCCCAGCGCATTCTGGGCATGGGCG70.10900031142946122No Hit
GAAGTATTCCTTGTGGTCGTCGCCGATGTCCGAGCCCGACATGTTCTGGT70.10900031142946122No Hit
CCGCTACCCGACGCCCCGCAGAATGACTCCAGCGGCGGGCATCGCGCCCG70.10900031142946122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)