FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Bi082c_2_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Bi082c_2_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3692
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GACTAGGCCTGCAACCTGCTTCCCGACCTTGGTGCTATTCGATCCACGAT70.18959913326110509No Hit
CACCGATTTTGATTACCAGCAAGCCAACAGCCCGCGCAGCAGTAAATCCG60.16251354279523295No Hit
GCGTGATCGTGGCCGTATCCTGTTGTTTGGCGTATTCCACCTGCAAACCA60.16251354279523295No Hit
GAACAAGACCCGTGGTGCGAATTCCACCAACCCGACCAGACCCAGGTCGA60.16251354279523295No Hit
CTTCTCGTAGAGCCGTGCGCGCAGGACCTGCATCGCCTTGGCCTTGTTCT50.13542795232936078No Hit
GTGCGGCACTGTCTGCGAACTATTGGGCGTGCCCCACGACAAACCTGTCT50.13542795232936078No Hit
CCGTGATGCCGGACATGCTTTCGAAGAACGAGTCGGTGTAGCTGATGTGC50.13542795232936078No Hit
ATCCAGGACCGTCTGGTGGCTGGTGGCGACAAGATGCAGCAAGGCGAGCG50.13542795232936078No Hit
GTATAACGCATCCGGCATGCTGTTATCGTAATGGTTACGCTGGCGGCTGA50.13542795232936078No Hit
CCAGCAGCGTGCGGCCCGCCAGGTCCTGTGCGCCGTGAATGGGCGCGCTG40.10834236186348861No Hit
TTAATGAGGTCACCAAGAACCCCAGGGTTCCGGCCACACCCCAGCCGTAG40.10834236186348861No Hit
GATCATCATAGCAGTGCTGATCGACAAATACCGTACCCGACACCATCAAA40.10834236186348861No Hit
AGTCAGGCCAAGGTATTGGGCTGTTACCTGATCAGCCCCAAGCCCGGCGC40.10834236186348861No Hit
ATATCAGGATGTGTCCGTCCTGCAACAGGGGAACCAACGATGATATCTTC40.10834236186348861No Hit
CAGCAAGGCCCGCGAGGCCTACACCCGTCTGATGGCGTTCGACGGCAAGC40.10834236186348861No Hit
ATTTTGATGTACTCCTTAGATGTATTTAACTTCTTTCTGCAAATGTTTTC40.10834236186348861No Hit
GAGAATCGCTTCAGGTCGGGCCACAACGCCAGCGCCCGTTGCAGGTCGGC40.10834236186348861No Hit
GAGCTGGACATCACCACCCGGGCGATCCGCTTCTATGAAGAACAAGGCCT40.10834236186348861No Hit
CCGATATAGCCGATACTCAGCAAGCCGGCGAGGCAAAGCGCGCTGGCTGC40.10834236186348861No Hit
GTCTTGGTCAGCTCTTCGGAAGAAAACTTTTTGTCGGCGAGACCGCGGGC40.10834236186348861No Hit
CTTTTCTTTCCTTCCGCAGGCGTCTGAGGAACCGTATTATGAAAAACTCT40.10834236186348861No Hit
GGCGATGAGTCTGAGAAGAGCAAACAGCGCGACGAGCAGCAGCCACGCCG40.10834236186348861No Hit
CCACAGTCGATGGCGGTCGCGGCAGTGATACCTATTATCTCGACCCGATG40.10834236186348861No Hit
GTGCCGGTGTGATCGCCTTCACCGGCGCTTACCACGGCCGCACCATGATG40.10834236186348861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)