FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_Bi061a_2_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_Bi061a_2_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5632
Sequences flagged as poor quality0
Sequence length101
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATAGCGTGCGTCAGTTCGCCCATTCACCCAGGCCACGCCGCAACTGTT90.15980113636363638No Hit
GTACAGGCGTCGGGTTTCAGCATAGGTCATCACCAGATTCTGCATCGCCC80.14204545454545456No Hit
CCTTTATAGAAGCCGTCGGCGCCTTTCTCGGAGATGCTGCGCAGGGTCTT70.12428977272727272No Hit
CCCCACTTGAAGATGCGCATGGTGTCGGTCATCGCCGCTTCGTCGCCAGC60.1065340909090909No Hit
GATCAGGTCGATCCCCGTTACAGAGCAAAAGCGCAACAGATAGATGAAGA60.1065340909090909No Hit
CACTGGCCGGGAGCATCAGCGCCGACAGTTCATCCTTGGCCAGGTCGAAC60.1065340909090909No Hit
GGCAGGAACTTGTCCACCCCTTGAACAACGGAGTAGATGTCGTACATGCC60.1065340909090909No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)