FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_198c_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_198c_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5358
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTATGAACATCCTCTTCTTTAAAACCGAGTGCTACCGTTGCAACAGATG80.14930944382232175No Hit
CGTGAAAAAGGCCGCATAGTATCAGTCGCTTCAGGTATTGGGCGCGGACA70.13064576334453154No Hit
ATGTAACTGGACTGAACATCATTGCCGAACGCTGCGAACATCATGAACAG70.13064576334453154No Hit
ATCCCAAATACAACAAACACACTCATAATGCTGATGGTCGCACTTGGCGC70.13064576334453154No Hit
GATGTATCTGGTACAATATCAGAACTTTTGACAGAGGAAGAACCTCAGAG70.13064576334453154No Hit
ATTTAATGCCTCAATGGAATTCTTCAGCACATCAGAGAAATTCGTTTGAC60.11198208286674133No Hit
TGCCCGCAGCGCACCAGGCGCATCGTGAGTGGACGCCGCAACGCCTGCTC60.11198208286674133No Hit
CTGTAATTGACTTTGAACACGCTGTTCAAATGACTTCTCCAGTGCTTTAA60.11198208286674133No Hit
AAATCCAATTGTTAGACTTTCCATGTACGCTACTAAAAGAAAGAATGCAA60.11198208286674133No Hit
GATTCGGACTATGGCTACAGAACTGGATGCGCTGCTCTCAAGTATTCGTG60.11198208286674133No Hit
GCTTACAGCCGCGTGCTCAGCCGCGATATTAAGCGAATCAACCAATCAAA60.11198208286674133No Hit
ATGCAGAGGCTCCTCCTAAAACGGCTGCAAACCACATCCAGAAAATAGCT60.11198208286674133No Hit
GAATAAGATGCTGCTGCCATTTCGAAACGTCAAGGCAAGCGGCGAACTGC60.11198208286674133No Hit
ATCCATCATACGTGTGATTTCTTCTCGGTCAGCTACTTGATATTTGTCCT60.11198208286674133No Hit
CCTGAAAAAAGGCCAGCACAAGATCATCAGCTTCTATGCCAAGAAAGCGC60.11198208286674133No Hit
GTTTTATGGTGTTTTATGTGTTACAATGTAAGCATCAATTTAAAAAGGAT60.11198208286674133No Hit
CTCAAAAAGGGTATTGCTCGAGGAACCAGCAGTCGTTACGAAAAAACGGT60.11198208286674133No Hit
CACCAAGACATTCATATTCTTGAAGGCGGCGAGCTGGATTACGAGATGAC60.11198208286674133No Hit
CTTCCTGCTACCGCCAACGGGCTGACACTGGCGTATAGCACGATGGAAAT60.11198208286674133No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)