FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_133b_2_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_133b_2_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4549
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTCGCGGCAATCGTTGGGGTACAACCGCCGACCGCCGCAGGGATCCAG90.19784568036931194No Hit
ATTCTCTCCGGCGCCGTGTTCGAGCCACGCGCCCTGAACGAGCTGTTCCC70.15387997362057595No Hit
GCTTCGAGTCGTCCGTCCGTCATGAACGCGAGCGTCTCGGAGCGGGCGAC70.15387997362057595No Hit
GGGTAGCCATTCCCCATACAGATCCTGAACATGTAAACAAACCGGCGATC60.13189712024620795No Hit
GACTTCGAACTGGGCCGGATCAAACGCACCCGTTTGCAGAACTTCGCCTG60.13189712024620795No Hit
CTGGAAGCCCTGGGCTGCTCGGTGGTACTCACCTCCGACGGCGAACAGGC60.13189712024620795No Hit
TGTAGAAGCTGACGGCCAGGTGCAGCAGCACGGCAACCAGCGCAATCGCC60.13189712024620795No Hit
GGCACAGGCCATCAATGCGCAAGTGGTCAAGCTATTTGATAAAGTGCCAG50.10991426687183997No Hit
ATATAGGGTGGCTCAGAATTAATTATCGTTTTCCTCAGATTACACCCAGG50.10991426687183997No Hit
ATCAAGCAGATCGAGAACCAGTCCTCCGGCGTCATCCCCGTGATGAAGCT50.10991426687183997No Hit
ACTTAAAGACCGGCTGCCATGGCTTTGTCGATCAGCCAGTTCAGGTTCGG50.10991426687183997No Hit
CGACACGATGATACGGAAAGGCCAGTATCCGATGGCGTTGCCTGCGGTTC50.10991426687183997No Hit
ACGTACAGCAACTGGGCGAAATGCTTCGCCACTATGCCGACAGCGAAGCG50.10991426687183997No Hit
GCCCCATGGGTCCTTGCCTTCACCGTTGAAGGTGGCCTTGAAAGTCACCG50.10991426687183997No Hit
ATTTCGGTATCTTCATTGGTCTGGACGGCGGCATCGACGGTCTGGTTCAC50.10991426687183997No Hit
ATGTATAACCGTGCCAACGGGCAACTGAGTCAGCACGCCTCGGCCAATGC50.10991426687183997No Hit
TACTTGAACAGGACAATGCAGACGAGATTCTGGCGCTCGGGCGGATGGTT50.10991426687183997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)