FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_078b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_078b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6737
Sequences flagged as poor quality0
Sequence length101
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACTTTGAAACCTATTTAGCCGTAGGGATTGTGTATTGGGTGATGACCAT80.11874721686210479No Hit
GCGCACATACGCGCGGTGGTGGCGTTGGTCCACAAGTGGGGGCTGTAACC80.11874721686210479No Hit
GTACAGGGCAAAGGCGGTGCGGTGGTCCGACAGACCGGTCTCCTGCAGGC70.10390381475434168No Hit
GCCCTGCAGGTGGCCGGCCGCCTTCCATGCCCCATTGGAACATGCGCATG70.10390381475434168No Hit
TGGAATGGGCAGCCATCGCGCTCTACGCTGCAGTGGGCGCTTATTTGCAG70.10390381475434168No Hit
ATCTCTCCCTCAAAGGCCTGTTGGTCGAGCGCCCGACCGACTGGACCCCG70.10390381475434168No Hit
GTTCAGGGCAAGCGCGTACTCGACCTGTTCAGCTACATCGGCGGTTGGGG70.10390381475434168No Hit
GCGCGGTTTCCCTGCCGACTTCGAGTTCATCGACGATCTCAAGCACCGCA70.10390381475434168No Hit
AGTAGTGCCAGCTCTAACACCGTATCTGCAATCAGTTTCAAGGCAGATAA70.10390381475434168No Hit
TTTCCCATCCAAATCGTCAGATGACCCCAGATACGATCGGGCTGTTTGTC70.10390381475434168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)