FastQCFastQC Report
Fri 6 May 2022
H3N72DRX2_n01_029b_KD.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3N72DRX2_n01_029b_KD.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6711
Sequences flagged as poor quality0
Sequence length101
%GC63

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAGGATCCCGGCGTCGGGCAGGCAAAGGAAGCCCTGGCTCAGGGGGCGG110.16390999850990912No Hit
GGCAAGGACCTTCCATGCCGCCGCGCTGCGCCAACTGCAGTTCTTTTGGC100.14900908955446282No Hit
CATTTGGTCCGCGGCGGCCCAGAAGGCGTCGCCGGTGCGTTGGAAGCCGA80.11920727164357026No Hit
GGAGTCCGCCTGCTGGGTGGTGGCGCCGCCGATCGTCGCAGTGACGCCGG80.11920727164357026No Hit
TTACTTAATAGCTCCCATTGCGAGGGCGCGCACTAGCTGCTTCTGTGCGA80.11920727164357026No Hit
CTCGAAGGGACGGGGCTCGCAATTTTCACAACCTACGGGAGTAGGCTCTG80.11920727164357026No Hit
TAGGTGGGGAGCACGCCGATCAGCGCAGTGGCCGCACCCATCATCACCAA70.10430636268812397No Hit
ACAGGGTATTGCGCCGGTTCACGTTCATTTCGCTGGCGGCCAGTGCCGTC70.10430636268812397No Hit
CCATATACCCCGGGTGCTCCTCTCGGACGGCACCGAACCCGAGGCGGTCC70.10430636268812397No Hit
CGGCCAGGCCGCTTATGTGGTAGTGCGAAAAGCACTGGCTTGATGATAGG70.10430636268812397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)