FastQCFastQC Report
Thu 25 Mar 2021
H3LNLDRXY_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameH3LNLDRXY_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1042846574
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCACCGT874858208.389136252750445No Hit
ACTGCTCG727423366.975363185112214No Hit
ACCACGAA717845966.88352417217607No Hit
CTCCTCTA683647016.555585711690702No Hit
CTTGGTAC638567046.1233076458282545No Hit
GAAAGGGT633804146.0776355391277335No Hit
TGTCTATG622054085.964962589022227No Hit
AAGTTGCA610051945.849872408939802No Hit
CAATACCC590612825.663467999272537No Hit
TGGTAAAC584940255.609072941155388No Hit
TGCACAAA569041765.456620122146559No Hit
GTGGGTGT566579795.433011951382218No Hit
GCACAATG566180945.4291873235803525No Hit
GCAGTTCT536930965.148705220754746No Hit
AAGCAGTC530350705.085606197714756No Hit
CTTTGCGG423531454.061301638796964No Hit
GGGGGGGG168796921.6186170066470391No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)