H3KMLBGXC_n01_0801-3G-GBF2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3KMLBGXC_n01_0801-3G-GBF2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16625114
Sequences flagged as poor quality	0
Sequence length	76
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	222164	1.3363156487227696	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAGCTATCTCGTATGC	120580	0.7252882596774975	TruSeq Adapter, Index 3 (97% over 37bp)
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	53308	0.32064742533494806	No Hit
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAG	34656	0.20845571344653638	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	33463	0.2012798228030196	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	32025	0.19263025805417033	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTA	28530	0.17160784581687683	No Hit
TTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGA	22124	0.13307577920969443	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21599	0.1299179061268392	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGT	21234	0.12772243245971127	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	20791	0.12505778907741624	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	16185	61.17612	46
GTATGCC	16190	61.02752	45
CGTATGC	16225	60.80959	44
GCACACG	16880	60.691833	11
CACCTAG	16635	60.48977	31
ACCTAGC	16900	59.520203	32
CACACGT	17455	58.77345	12
ACGTCTG	17635	58.33093	15
CTCGTAT	15900	57.958275	42
TCGTATG	16775	57.87695	43
AGCACAC	17750	57.73645	10
ACACGTC	18240	56.243492	13
CACGTCT	18270	56.208103	14
ATGCCGT	17765	55.71548	47
GTCACCT	18150	55.228672	29
TCACCTA	18420	54.704147	30
CCTAGCT	18595	54.35823	33
GCCGTCT	17990	53.87081	49
TCCAGTC	18890	53.417175	25
TAGCTAT	18115	53.05502	35