H3KMLBGXC_n01_0801-14R-LFY.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	H3KMLBGXC_n01_0801-14R-LFY.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	17498854
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	183035	1.0459827826439376	No Hit
CTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCTGTAGGAC	60099	0.34344534790678294	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATTTTATCTCGTATGC	49762	0.28437290807729465	TruSeq Adapter, Index 9 (97% over 36bp)
CGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAG	32989	0.1885209168554695	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29548	0.16885677199204016	No Hit
GGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGT	28706	0.16404502832014028	No Hit
CTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAG	26366	0.15067272405381518	No Hit
CCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTA	21733	0.12419670453848006	No Hit
TTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGA	19624	0.11214448671895885	No Hit
CGACGATGACGATAAGGATCCGATGGCCTCCTCCGAGGACGTCATCAAGG	18891	0.10795564098083223	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	7835	53.738968	44
GTATGCC	8025	53.46974	45
TATGCCG	8030	52.303215	46
GCACACG	10130	50.82569	11
TACTCTA	32115	49.229984	4
ACGTCTG	10610	48.92135	15
GTACTCT	32320	48.7768	3
CTCGTAT	8305	48.337757	42
CACACGT	10865	47.516953	12
ACTCTAG	36080	47.14748	5
ACACGTC	11025	47.017445	13
TCGTATG	8640	46.909145	43
TTGTACT	33540	46.805763	1
TGTACTC	33945	46.4932	2
CACGTCT	11310	46.01807	14
AGCACAC	11320	45.66823	10
ATGCCGT	8970	45.339462	47
CTCTAGT	35450	44.915077	6
TCTAGTT	35420	44.44711	7
TGCCGTC	9130	43.50987	48